Polyodon spathula (Mississippi paddlefish): 121296414
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Entry
121296414 CDS
T07273
Symbol
nod2
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 2
KO
K10165
nucleotide-binding oligomerization domain-containing protein 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
121296414 (nod2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pspa04054
]
121296414 (nod2)
Pattern recognition receptors [BR:
pspa04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
121296414 (nod2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
CARD
LRR_6
NLRC4_HD2
NOD2_WH
LRR_4
T3RM_EcoP15I_C
AAA_16
AAA_29
nSTAND3
AAA_22
ABC_tran
AAA_23
Sigma54_activat
DUF5333
AAA_30
LRR_8
Motif
Other DBs
NCBI-GeneID:
121296414
NCBI-ProteinID:
XP_041077887
LinkDB
All DBs
Position
21:540595..551121
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AA seq
984 aa
AA seq
DB search
MSARCLLRSQRDQLVRVLAGGSQEAFHSLLDYLLAWEVLLQEDYENVRASGRTLSGATRS
LLDLVEGKGEAACRLLFAALNQVLPASQKSHLSLEDFSSPPPLEADPLSTAVQSLLRYRP
SLVGKLHGHVAATLKLLVDRGCFTQYDCDEVQLPVYTPSQQARRLLDLTRMKGEDTAQLL
LTTIQQLGKGPADTPSGAAYLKYQKKLRTTVSAQSKFLSTYDRTDNICLEDIYTDGVLEV
SQSACGTSDQKQCPIGLEDILSSAGTVNEDADTVLISGEAGSGKSTLLQWLHLLWASGRA
FQEYLFVFPFSCRRLNFMEREVSLRSLMFEHCCWPDADQDEVFHFILSHPEKTLFTFDGF
DEFKFCFTDEKRHCSPTSPTGIQSVLFNLLQGNLLKNVCKVITSRLEAVSAPLKNCIRKE
ASLKGFSQQGIESFIRKNHSDPTITVRLIASLQSNSALFSLCHIPVFSWIVSRCHAELLG
QGSGSPQTTTDLYLMILQHFLLHSQSAAGSWMQGRVGTILHLGKLALDGLMSSCYVFSSQ
DLKQAQVAEEDISTGFLSTSKNISSQSGKHYEFLHITVQCFFASLFIVINDNIDHSAIAA
LFCSGSKKSSLASARACPEPCFLSTSCQESRVQTLLQNAERPNLQITAGFVAGLLSQRHR
SALLESCQPAKLARKHDYVKKYLSKGMLEHFKSIPPPLKGEKKSMHAMPEFVWLIKCIYE
MQNSDLAKDAMAKLEVEHLKLTYCNIGPSECTALAYVLRHLKKPIGLQLDCNSVGDVGIE
QLLPCLEKCHAIYLRNNNISDEGVRRLLEKGIHCPSFQKIALFNNNLTNECTKHFAKLLK
QKQNFLSLRLGNNHITKEGAEQLAEGLRESSSLQYLGLWGNKIGDKGAEALARALQSSRT
LIWLSLVDNSIGNAGAHALAGLVQGSVSLEELWLTNNHITRQGMQDLVEALKKNTTVKSV
WLRGNKLSTEEVEELTQIDRRLTF
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctcgttgtctcctccgctcacagagggaccagctcgtcagagtcctggcagga
gggtcgcaggaagctttccacagcctgctggactacctgctggcgtgggaggtgctgctg
caggaagactatgagaacgtgagggcgtctggccgcaccttgtctggggctacccgcagt
ctcctggacctcgttgaaggtaaaggggaggcagcctgcaggctcctgtttgctgcttta
aaccaagtcctgcccgcttcgcagaaatctcacctgtccctggaggatttcagcagcccg
ccgccactggaagcagacccgctctccactgcggtgcaatccctcctgcgctacaggcct
tccctggtagggaagctccacgggcatgtcgcagccaccctgaagcttctcgtggacaga
ggctgtttcacacagtacgactgtgatgaagttcagctgcctgtgtacacgccctcacag
caggcacggagactgctggacctcaccagaatgaagggagaagacactgcccagctgcta
ctgacgaccatccagcagttaggaaagggacccgctgatacccccagtggtgccgcgtac
ttgaagtatcagaagaagctgaggaccacagtttcagcgcagtcgaaattcctcagcacc
tatgacaggactgacaacatctgcctggaggacatctatacagacggcgtcctggaagta
tcacagagtgcatgtgggacgagtgaccagaagcagtgtcccattgggctggaggacatc
ctgagctcggctgggacggtgaacgaggacgcagacacggtgctgatatcgggggaggcg
ggcagtggaaagagcaccctgctgcagtggctccacctgctttgggcttcaggcagggcc
ttccaggaatacctttttgtcttccccttcagctgcaggagactgaacttcatggagagg
gaggtgtctctgcgttcactcatgttcgaacactgctgctggccagatgcagaccaggac
gaggtctttcacttcatcctcagccaccccgagaaaaccttgttcaccttcgacggcttt
gacgagtttaaattctgcttcactgacgagaagaggcactgctcccccaccagccccaca
ggcatccagagcgtccttttcaatctcctgcagggaaacctgctgaagaacgtgtgcaag
gtgatcaccagtagactggaggcagtcagcgcccctctgaagaactgcatccggaaggag
gcatccctgaaaggcttttcccaacaaggcatagagtcatttattaggaaaaaccacagc
gacccgacgatcacagtgcgcttgattgcatccttacagagtaactcggctcttttcagc
ctgtgccacattccggttttctcctggatcgtttccaggtgccatgcagagctgcttgga
caggggagcggcagtccacagaccacgacagacctttacctgatgatacttcagcacttc
ctcctgcactcccagtctgcagctggcagctggatgcagggaagggtcggcaccatcctc
cacttgggaaagctagccctggatggcctaatgtcatcctgctatgtgttttcatcccag
gatctcaagcaggcccaagtggcagaggaggacatctcaacaggctttctcagcaccagc
aagaacatctcctcccaaagcggcaagcactatgagttcctccacatcacagtgcagtgc
ttttttgcatccctcttcatcgttatcaacgacaatatcgaccattccgctatcgctgcg
cttttctgttctggtagcaagaagtcctcactggcttctgccagggcttgtccagagcct
tgcttcctctccacctcctgccaagaaagcagagtgcaaacgctgctgcagaacgcagaa
agaccaaaccttcaaataaccgcaggctttgtggctggcctgctgtctcagcgccacagg
agtgcactgctcgaatcatgccagcctgcgaaactggccaggaagcacgattacgtgaaa
aagtacttgtctaaaggcatgctggagcacttcaaatcaatacctcccccgctgaagggg
gagaagaagagcatgcacgctatgcctgaatttgtgtggctgatcaagtgcatttatgaa
atgcagaacagtgacttagccaaagatgccatggcgaaacttgaagtggagcacttgaag
ctgacctactgtaatatcggcccatctgaatgcactgccctggcctatgtgctgaggcac
ctgaagaagcctatcggtttgcagttagactgcaattcagtgggagacgtgggaatcgag
cagctcctcccctgcctggagaagtgtcatgccatttaccttcgcaacaataacatttcg
gacgagggcgtccgcagactgcttgagaaagggattcactgcccgagttttcagaagatt
gcgctgtttaacaacaacttaaccaatgaatgtacgaagcattttgcaaaacttctcaag
cagaagcaaaattttctttctttaagattgggtaataaccacatcacaaaggaaggtgcg
gagcagctggccgaggggttgagagaaagcagctcccttcagtacctggggctgtggggg
aacaagatcggagacaagggcgcagaagcactggcacgggcccttcagagcagcaggact
ctgatttggttaagcctggtagacaacagcatcggcaatgccggggcgcacgctctggcc
gggctggtccaggggagcgtctctctggaggagctctggcttacaaacaaccacattaca
aggcaggggatgcaggatcttgtagaagcacttaagaaaaatactacagtcaaatcagtc
tggttgagaggcaacaaactgagcactgaggaggttgaggaactcacccagattgacaga
agacttactttctga
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