Polyodon spathula (Mississippi paddlefish): 121296878
Help
Entry
121296878 CDS
T07273
Name
(RefSeq) replication factor C subunit 5-like
KO
K10756
replication factor C subunit 3/5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03030
DNA replication
pspa03410
Base excision repair
pspa03420
Nucleotide excision repair
pspa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121296878
03410 Base excision repair
121296878
03420 Nucleotide excision repair
121296878
03430 Mismatch repair
121296878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pspa03032
]
121296878
03036 Chromosome and associated proteins [BR:
pspa03036
]
121296878
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121296878
DNA replication proteins [BR:
pspa03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121296878
DNA Replication Termination Factors
ELG1-RFC complex
121296878
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
121296878
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121296878
Check point factors
HRAD17(Rad24)-RFC complex
121296878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
AAA_11
AAA_22
RuvB_N
AAA_14
ResIII
AAA_16
AAA_assoc_2
DEAD
DUF815
AAA_24
PhoH
ATPase_2
AAA_7
DNA_pol3_delta
AAA_19
AAA_5
TIP49
AAA_30
Thioredoxin_6
T2SSE
TniB
nSTAND3
Mg_chelatase
AAA_2
bpMoxR
Motif
Other DBs
NCBI-GeneID:
121296878
NCBI-ProteinID:
XP_041078702
LinkDB
All DBs
Position
22:27838003..27846086
Genome browser
AA seq
334 aa
AA seq
DB search
MASTCNSQLQSRNLPWVEKYRPQTLKDLISHQDILGTIQRFINEERLPHLLFYGPPGTGK
TSTILACAKQLYKEKEFNAMVLELNASDDRGIDVVRGPILSFSSTRTIFNRGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTQEQMVPRL
EYVIEQESVDVTPDGMKAIVTLSNGDMRRSLNILQSTSMAYGTVSEDTVYTCTGHPLKAD
IANILDWMLNQDFSTAYNNIMELKTLKGLALHDVLTEIHLLVHRVDFPASVRIHLLIKMA
NIEHRLASGTSEKIQLSSMIAAFQVARDMVAAEA
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaacttgcaatagccagttgcagtctagaaaccttccgtgggtggaaaaatat
cgaccgcagacgctgaaggacttgatctcgcatcaggacattctaggaacaattcagcgc
tttatcaatgaagagaggctcccgcatctcctgttttatgggcctcccgggactgggaag
acctctaccatcctggcttgtgccaagcagctctacaaggagaaagagttcaacgccatg
gtcctggagctcaatgcatcagatgacagaggtattgatgttgttcggggtccgatcctc
agcttctccagcaccaggaccatctttaatcgaggatttaaactagttatactggatgaa
gccgacgccatgacccaggatgctcagaatgctttgagaagagtgattgagaagttcacc
gagaataccaggttttgcttgatctgtaactacctgtcaaagatcattcctgcactgcag
tctcgatgcacgaggttccggttcggccccctgacccaggagcagatggtaccccggctg
gaatatgttatagagcaggaaagtgttgatgtaaccccagatggaatgaaggctattgtg
accctgtctaacggtgacatgcgtcgatcactcaacattttacagagtaccagcatggct
tatggaaccgtgagtgaggatacagtgtacacctgcacaggtcaccctctgaaggcagac
attgctaacattctggactggatgctgaaccaggatttctccacagcgtacaataacatc
atggagctgaaaacactgaagggcttggcgttgcatgacgtgctgacagagatccacctg
ttggtgcacagagttgatttcccagcttcagttcgaatccatttactcatcaagatggca
aatattgagcacaggcttgcgtctgggacgagcgagaagatccagctgagctccatgatc
gcagcgtttcaggtggcgcgggacatggtggcagctgaagcctga
DBGET
integrated database retrieval system
