Polyodon spathula (Mississippi paddlefish): 121307797
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Entry
121307797 CDS
T07273
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121307797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121307797
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121307797
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121307797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
Motif
Other DBs
NCBI-GeneID:
121307797
NCBI-ProteinID:
XP_041096011
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All DBs
Position
59:1017933..1021988
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AA seq
359 aa
AA seq
DB search
SRSNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLGP
FLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFP
RNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSELR
SNLQVSNEAGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVD
LDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRP
HPWGLLITFIELIKNPAFKFWNHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTSAS
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
tctcgcagcaacactttccatatcctgcggcccaccaaagctcctgggtttgtgtacgcc
tggctggagctgatctctcatcgcatatttattgctaggatgctggcacatacaccccaa
cagaagggctggcccatgtatgctcaactgctgattgacctgttcaagtacctgggtccc
ttcttaaggaatgttgagctcaacaaacctatgcaaattctctacaagggcactctgcgt
gttttgctggtcctcctccatgacttcccagagttcctgtgtgattaccattatggcttc
tgtgatgttatcccgcccaactgtatccaactacggaacctgattctcagtgccttccca
cgcaacatgaggcttccagatccatttactcctaacctaaaggtggacatgttgagtgaa
atcaatattgctcctcgtattctcactaattttactggagtgatgccaccacagtttaag
aaggatttggactcctacctgaagactcgttctcctgtcacgttcttgtccgagctccgc
agcaacctgcaggtttctaatgaggcagggaatcgttataacattcagcttatcaacgcg
ctggtgctctatgttggaacccaagcgattgctcacatccacaacaagggtagtacacca
tccatgagcaccatcacacactctgctcatatggacatctttcagaacctggctgtggac
ctcgatactgaaggccgctacctgtttctgaatgcaattgccaatcagctgcgttaccca
aacagtcacactcactacttcagttgcacaatgctctatctgtttgctgaggcaaacacc
gaggctatacaggagcagataaccagggttctgctggagaggttgattgtgaacagacct
catccatggggtttacttatcactttcatagagttgattaaaaacccagccttcaagttc
tggaaccatgactttgtccactgtgcaccagagattgaaaagttgttccagtcagtggcc
cagtgctgcatggggcaaaagcaggcacagcaagtgatggaaggcactagtgctagttag
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