Polyodon spathula (Mississippi paddlefish): 121310834
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Entry
121310834 CDS
T07273
Symbol
traf2b
Name
(RefSeq) TNF receptor-associated factor 2
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04010
MAPK signaling pathway
pspa04137
Mitophagy - animal
pspa04141
Protein processing in endoplasmic reticulum
pspa04210
Apoptosis
pspa04217
Necroptosis
pspa04621
NOD-like receptor signaling pathway
pspa04622
RIG-I-like receptor signaling pathway
pspa04920
Adipocytokine signaling pathway
pspa05132
Salmonella infection
pspa05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121310834 (traf2b)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121310834 (traf2b)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
121310834 (traf2b)
09143 Cell growth and death
04210 Apoptosis
121310834 (traf2b)
04217 Necroptosis
121310834 (traf2b)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
121310834 (traf2b)
04622 RIG-I-like receptor signaling pathway
121310834 (traf2b)
09152 Endocrine system
04920 Adipocytokine signaling pathway
121310834 (traf2b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121310834 (traf2b)
09171 Infectious disease: bacterial
05132 Salmonella infection
121310834 (traf2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121310834 (traf2b)
04121 Ubiquitin system [BR:
pspa04121
]
121310834 (traf2b)
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121310834 (traf2b)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
121310834 (traf2b)
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
121310834 (traf2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
TRAF3_RING
zf-C3HC4
zf-C3HC4_4
zf-RING_4
zf-RING_6
zf-RING_5
zf-C3HC4_2
Sina_ZnF
MATH
Cyc-maltodext_C
Motif
Other DBs
NCBI-GeneID:
121310834
NCBI-ProteinID:
XP_041099688
LinkDB
All DBs
Position
Unknown
AA seq
554 aa
AA seq
DB search
MAKNSLDSSLPGFILTILGTSLEPKYLCRECSRILRKPVQAQCGHRFCSFCYNKLTSSGP
QRCTACEQEEIFEEPSSILDTNSAFPDNAARREIENLPAVCNNEGCSWKGSIKEYETSHE
GRCECSLVQCQACQEMIKLSEKEQHSERECPERTLNCRYCKLTFSFKHIKAHDEICQKFP
LQCEGCGKKKILREKFADHARSCSKYKSSCRFSAVGCNAIVENEKMLHHEQGSVAEHLRM
LLAAVQSLREREGQPRSLQAPHSKAQELGSSIRHLEQRLGSLGLYCSEGEEEEEEEGGAA
ATLLPLADTRLNGYSGKAQALPKLCEALARKLSTFENIVCVLNREVEKSSLTLEAYSQQH
RLDQQSMDSLTHKVRQMERSLALKDLAIAELEQKLKEQEFSTYDGIFIWRIGEFTRKRQN
AREGRNPAMFSPGFYTSKYGYKMCLRLYLNGDGTGRGTHLSLFFVVMKGNSDALLKWPFN
QKVTLMLLDQNNREHIIDAFRPDVTSSSFQRPVSEMNIASGCPLFCPLAKLEGKSSYLRD
DTIFIKAIVDLTGL
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaactccctagattccagtttaccgggtttcattctaacaattctagggacg
agcttggaaccaaaatatctgtgccgggagtgttctcggattttaagaaaacccgttcag
gcgcagtgcggccatcgcttctgctcgttctgttataacaagctcacaagctccggaccc
cagaggtgcacagcctgtgaacaggaagagatcttcgaagagccgtcgtctattttagac
acaaattctgcttttccagataatgctgctcgcagggaaattgaaaatttaccagcggtt
tgcaacaacgagggctgttcatggaaaggatccattaaggagtacgagactagccatgag
gggaggtgtgagtgctcgctggttcagtgccaggcttgccaggagatgatcaagctcagt
gagaaggagcagcacagtgagcgagagtgcccagagagaaccctcaactgcaggtactgc
aaactgaccttcagcttcaagcacatcaaggctcatgatgaaatctgtcagaagtttccg
ctgcaatgcgaaggatgtggaaagaagaaaatcctgcgagaaaagtttgcagatcatgcg
agatcctgcagcaaatacaaaagctcatgcagattcagtgctgtgggatgcaatgccatt
gtggagaatgagaagatgctgcatcacgagcagggcagcgtggcggagcacctgcgcatg
ctgctggctgcggtgcagagcctgcgagagagggaggggcagccacgcagcctgcaggca
ccccacagcaaggcgcaggagctgggcagctcgatccgtcacctggagcagcggctgggc
agcctggggctgtactgctccgagggggaggaggaggaggaggaggaggggggcgccgcg
gccacgttgctcccccttgctgacacacggctcaacgggtacagcggcaaggctcaggcc
cttcccaagctgtgcgaggcgttggcgcggaagctctccaccttcgagaacatcgtgtgt
gttctgaaccgcgaggtggagaagagctccctgacgctggaggcctacagccagcagcat
cgcctggatcagcagagcatggactccctcacacacaaggtcaggcagatggagcgctct
ctggctctgaaggacctggccatagccgagctggagcagaagctcaaggagcaggagttc
agcacttacgacgggatcttcatctggaggatcggggagttcacccggaaacggcagaac
gccagggaggggcgcaacccggccatgttctccccagggttctacaccagtaagtacggg
tacaagatgtgcctgcgtctgtacctgaacggagacgggacggggcgcgggacgcacctc
tctctcttcttcgttgtgatgaagggtaacagcgacgccctgctcaagtggcccttcaac
cagaaggtcaccctgatgctactggaccagaataaccgggagcacatcatcgacgccttc
cgccccgacgtcacctcctcctccttccagcggccggtcagcgagatgaacatcgccagc
ggctgcccgctcttctgcccgctcgccaagctggagggcaagagctcgtacctgcgagat
gacaccatcttcatcaaagccatcgtcgacctgaccgggctatga
DBGET
integrated database retrieval system