KEGG   Polyodon spathula (Mississippi paddlefish): 121310834
Entry
121310834         CDS       T07273                                 
Symbol
traf2b
Name
(RefSeq) TNF receptor-associated factor 2
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04010  MAPK signaling pathway
pspa04137  Mitophagy - animal
pspa04141  Protein processing in endoplasmic reticulum
pspa04210  Apoptosis
pspa04217  Necroptosis
pspa04621  NOD-like receptor signaling pathway
pspa04622  RIG-I-like receptor signaling pathway
pspa04920  Adipocytokine signaling pathway
pspa05132  Salmonella infection
pspa05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    121310834 (traf2b)
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    121310834 (traf2b)
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    121310834 (traf2b)
  09143 Cell growth and death
   04210 Apoptosis
    121310834 (traf2b)
   04217 Necroptosis
    121310834 (traf2b)
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    121310834 (traf2b)
   04622 RIG-I-like receptor signaling pathway
    121310834 (traf2b)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    121310834 (traf2b)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    121310834 (traf2b)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    121310834 (traf2b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pspa03019]
    121310834 (traf2b)
   04121 Ubiquitin system [BR:pspa04121]
    121310834 (traf2b)
Enzymes [BR:pspa01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     121310834 (traf2b)
Messenger RNA biogenesis [BR:pspa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     121310834 (traf2b)
Ubiquitin system [BR:pspa04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    121310834 (traf2b)
SSDB
Motif
Pfam: TRAF-mep_MATH TRAF_BIRC3_bd zf-TRAF TRAF2_zf TRAF3_RING zf-C3HC4 zf-C3HC4_4 zf-RING_4 zf-RING_6 zf-RING_5 zf-C3HC4_2 Sina_ZnF MATH Cyc-maltodext_C
Other DBs
NCBI-GeneID: 121310834
NCBI-ProteinID: XP_041099688
LinkDB
Position
Unknown
AA seq 554 aa
MAKNSLDSSLPGFILTILGTSLEPKYLCRECSRILRKPVQAQCGHRFCSFCYNKLTSSGP
QRCTACEQEEIFEEPSSILDTNSAFPDNAARREIENLPAVCNNEGCSWKGSIKEYETSHE
GRCECSLVQCQACQEMIKLSEKEQHSERECPERTLNCRYCKLTFSFKHIKAHDEICQKFP
LQCEGCGKKKILREKFADHARSCSKYKSSCRFSAVGCNAIVENEKMLHHEQGSVAEHLRM
LLAAVQSLREREGQPRSLQAPHSKAQELGSSIRHLEQRLGSLGLYCSEGEEEEEEEGGAA
ATLLPLADTRLNGYSGKAQALPKLCEALARKLSTFENIVCVLNREVEKSSLTLEAYSQQH
RLDQQSMDSLTHKVRQMERSLALKDLAIAELEQKLKEQEFSTYDGIFIWRIGEFTRKRQN
AREGRNPAMFSPGFYTSKYGYKMCLRLYLNGDGTGRGTHLSLFFVVMKGNSDALLKWPFN
QKVTLMLLDQNNREHIIDAFRPDVTSSSFQRPVSEMNIASGCPLFCPLAKLEGKSSYLRD
DTIFIKAIVDLTGL
NT seq 1665 nt   +upstreamnt  +downstreamnt
atggcaaaaaactccctagattccagtttaccgggtttcattctaacaattctagggacg
agcttggaaccaaaatatctgtgccgggagtgttctcggattttaagaaaacccgttcag
gcgcagtgcggccatcgcttctgctcgttctgttataacaagctcacaagctccggaccc
cagaggtgcacagcctgtgaacaggaagagatcttcgaagagccgtcgtctattttagac
acaaattctgcttttccagataatgctgctcgcagggaaattgaaaatttaccagcggtt
tgcaacaacgagggctgttcatggaaaggatccattaaggagtacgagactagccatgag
gggaggtgtgagtgctcgctggttcagtgccaggcttgccaggagatgatcaagctcagt
gagaaggagcagcacagtgagcgagagtgcccagagagaaccctcaactgcaggtactgc
aaactgaccttcagcttcaagcacatcaaggctcatgatgaaatctgtcagaagtttccg
ctgcaatgcgaaggatgtggaaagaagaaaatcctgcgagaaaagtttgcagatcatgcg
agatcctgcagcaaatacaaaagctcatgcagattcagtgctgtgggatgcaatgccatt
gtggagaatgagaagatgctgcatcacgagcagggcagcgtggcggagcacctgcgcatg
ctgctggctgcggtgcagagcctgcgagagagggaggggcagccacgcagcctgcaggca
ccccacagcaaggcgcaggagctgggcagctcgatccgtcacctggagcagcggctgggc
agcctggggctgtactgctccgagggggaggaggaggaggaggaggaggggggcgccgcg
gccacgttgctcccccttgctgacacacggctcaacgggtacagcggcaaggctcaggcc
cttcccaagctgtgcgaggcgttggcgcggaagctctccaccttcgagaacatcgtgtgt
gttctgaaccgcgaggtggagaagagctccctgacgctggaggcctacagccagcagcat
cgcctggatcagcagagcatggactccctcacacacaaggtcaggcagatggagcgctct
ctggctctgaaggacctggccatagccgagctggagcagaagctcaaggagcaggagttc
agcacttacgacgggatcttcatctggaggatcggggagttcacccggaaacggcagaac
gccagggaggggcgcaacccggccatgttctccccagggttctacaccagtaagtacggg
tacaagatgtgcctgcgtctgtacctgaacggagacgggacggggcgcgggacgcacctc
tctctcttcttcgttgtgatgaagggtaacagcgacgccctgctcaagtggcccttcaac
cagaaggtcaccctgatgctactggaccagaataaccgggagcacatcatcgacgccttc
cgccccgacgtcacctcctcctccttccagcggccggtcagcgagatgaacatcgccagc
ggctgcccgctcttctgcccgctcgccaagctggagggcaagagctcgtacctgcgagat
gacaccatcttcatcaaagccatcgtcgacctgaccgggctatga

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