Polyodon spathula (Mississippi paddlefish): 121313696
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Entry
121313696 CDS
T07273
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121313696
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121313696
09142 Cell motility
04820 Cytoskeleton in muscle cells
121313696
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pspa00535
]
121313696
Proteoglycans [BR:
pspa00535
]
Extracellular matrix (ECM) proteoglycans
Others
121313696
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
121313696
NCBI-ProteinID:
XP_041102429
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Position
3:95420195..95460271
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AA seq
488 aa
AA seq
DB search
MGQDTYFITRKKSWPHCSLYASACVALLSVLWSPALCQTDLDYNHNSVDDNTVCPNIRVG
QDDLPGFDLISQFQLDVVSLKGVRKVEGSTALQVAYRLDKDAGFQIPTRIIYPHGLPEEY
SFVTTFRMVKNTIHKVWNMWQVVDQDGYKQVGLRLNGDQQGVEFFLVGKDGNLQVVTFPG
VSQLFNTEWHKVLVGVEHDQVTLYLDCQPIGSKPIKTKGTVNTEGETLIGRLDADPDTSV
AFELQWMLIHCDPQRAQRESCSELPIQERIIPNAEPGREPRPVPGPAGPPGPQGPPGDHG
LDGKNGVPGLPGTPGLPGLKGDRGEVGLPGLRGLPGLPGVHGQQGSLGPRGPVGERGLPG
SPGSPGSPGSPGAVSVGPAGPPGKPGEAGDPGNLGPEGPMGPKGSAGPPGPPGPAGPPGV
FTGEGSGDFCSTACPAGPQGNPGLAGLKGHKGHMGEPGKPGKDGQKGDSGLPGPQGLTVL
LGARELEG
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgggacaagatacttatttcattacaagaaaaaaatcttggcctcactgttcactgtac
gcttcggcctgtgtagctctactgtcagtactgtggtcccctgcgctgtgtcaaaccgac
cttgattacaaccacaacagcgtagatgacaacactgtctgccctaatataagagttgga
caagatgacctaccaggctttgacctgataagccaattccagttggacgttgtatcgctc
aagggagtgagaaaggtggaaggctcgacagcattgcaagtggcttacagactcgataaa
gatgcaggctttcaaattcctacgagaataatctacccacatggtttgcccgaggagtat
tcctttgtgaccacgttccgcatggtgaagaacaccatccacaaagtatggaacatgtgg
caggtggtggaccaggatggctacaagcaggtgggactgcgtctcaacggagaccagcag
ggggtcgagttcttcctggtgggcaaggatggcaatctgcaagtggtcaccttcccaggg
gtatcccaacttttcaacacagagtggcacaaagtgctggtgggagtggagcatgatcag
gtgaccctctacctggactgccagcctattggatccaaacccattaagaccaaaggtact
gtcaatactgaaggggagactctcatcggaaggctggatgcagatcctgatacctctgtt
gcgtttgaactgcagtggatgctgatacactgcgacccccagagggcccagagagaatcc
tgctctgagttacccattcaagagagaattattcccaatgctgagcctggtcgagagcca
aggcctgtcccaggccccgcgggtcccccgggccctcaggggcctccaggagaccacggg
ttggatgggaagaatggtgtacctggccttcctggaacacctggtctgcctggtctgaaa
ggagatagaggagaggttggacttcctgggctgagaggactgccaggacttcctggagtt
catggacagcaagggtccttgggcccaagaggtcctgtcggagaacggggattacctgga
tctcctggatctcctggatctcctggatctcctggagctgtatcagtgggacctgcagga
cctcctgggaaacctggtgaagctggggatcctggcaatcttggacctgagggaccgatg
ggaccaaaaggcagtgctggtcccccaggtccacccggacctgcgggaccacctggagtt
ttcacaggagaggggagtggagatttttgttcaacagcttgccccgctggtccgcaaggc
aaccccgggttggcaggtctgaagggccacaaaggtcacatgggcgagccagggaagcca
ggaaaggatggtcaaaagggagattctgggttacctggtccacagggcctgactgtgcta
ctgggagcgagggagctagagggttga
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