Polyodon spathula (Mississippi paddlefish): 121316637
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Entry
121316637 CDS
T07273
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121316637
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121316637
09142 Cell motility
04820 Cytoskeleton in muscle cells
121316637
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pspa00535
]
121316637
Proteoglycans [BR:
pspa00535
]
Extracellular matrix (ECM) proteoglycans
Others
121316637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
121316637
NCBI-ProteinID:
XP_041107611
LinkDB
All DBs
Position
6:10308108..10344815
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AA seq
1033 aa
AA seq
DB search
MGTFHWQLPIVFCLLASVVTLGSATGEHSQRFPHTVDVNRNEGALCPRINIGEDDLPGFD
ILSQFHLGTASALGGVQTVAGSTPMQIAYRMGPEANYRIKTRSAYPLGLPEEFSFLTTFR
MSGSTITKDWNIWQIQDSLGNEQLAVRVNGGTQSLEFSCTTRDNRPQTIVFSFLPFLFDS
QWHKILISIERGALTLFIDCIMIDSHTLLPRGTVNLDGFTLIGKLKDTPAIAVPFELQWM
LIHCDPKRPQRETCNELPARRSVSARNEFLMNFKMPADLTAPTGISYLSVTGRGFSWGFC
LGGPRVQLSPEKRHICFLASHRVTMASATSNRGPLFIVILLQIAFICSAQRGPVGPRGTP
GLAGPAGVPGIDGIDGERGEDGPTGPPGLDGDLGKPGSAGLPGEPGADGLTGPDGDPGPD
GPIGQKGEPGATGPRGSAGSGPDGPPGPPGAGGIPGGLGRLGPLGDAGVQGPPGPPGPPG
PRGAAGFHDGSGELCPNACPPGSPGHPGLPGMKGHKGVKGESGEPGKQGHKGEEGDQGAS
GEVGAQGPTGPQGIRGITGMMGPKGERGAGGHDGEPGPQGLQGATGDQGQRGVVGETGPK
GDVGSQGPRGISGLPGSKGESGLPGVDGRDGIPGMPGTKGDSGKPGAPGESGLQGLPGLP
GSYGAKGGAGDKGDSGASGLLGTMGMLGALDLPLDERGGMQSLVDQPSGNNPQWGVLIKR
DPFISRRSTAAKGERGVPGPSGPTGTPGLRGSKGDPGLPGLPGPPGLPGVKGDRGAVGLD
GPKGEQGDAGSEGTSGDKGDQGNQGEPGPKGSTGHPGEPGSRGPEGSRGQSGIEGPSGSP
GPRGMQGDRGVPGLPGSQGPAGKEPSDQHIRQVCMRVMQEQLAQLAASLRRPESGAAGLP
GRPGSPGPPGPAGDSGFPGQAGPRGLPGLKGPPGLLGLKGPKGEMGERGDRGITVRGSKG
LPGAPGLPGEPGRPGYGREGRDGERGPPGVPGQPGIPGPPGPAGPSGYCDPSACNLQAIA
APQSLKDSNVKGP
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggggacttttcattggcaactaccaattgtattctgcttactcgcttctgtggttaca
ttaggctctgctactggggagcactcacaaaggtttcctcacaccgtggacgtgaaccga
aatgaaggagcgttgtgtcctcgaataaacatcggagaggacgatttgccaggatttgat
atactttctcagtttcacttaggcacagcttctgcgttaggaggtgtccagactgtggct
ggatctacacctatgcagattgcctatagaatgggaccagaagcaaactataggataaaa
acgaggtcggcgtaccctctggggctaccggaagagttttcctttctcacaacttttcgc
atgagtggcagcaccattactaaggattggaatatttggcagattcaagattccttaggc
aacgaacaacttgcagtaagagttaacggcgggacacagtccctggaattctcgtgcacc
acaagggataaccgacctcagacgattgtcttctcatttctaccgttcctattcgattcc
cagtggcacaagattttaataagcattgaaaggggcgctctgactcttttcattgactgc
atcatgatagactcgcacactcttctcccaagaggcacagtaaatctcgatggctttacc
ctgataggaaaactaaaggacacccctgcgattgctgtaccatttgaacttcagtggatg
ttaattcattgcgatccaaaacgaccgcaaagagaaacctgcaatgaacttccagcgaga
agatcggttagtgctagaaatgagtttctaatgaatttcaaaatgcctgctgacttgacg
gcgcctaccgggatttcttacctttctgttactggtaggggattcagttgggggttttgt
ctcgggggtccaagagtccaactaagcccagaaaaaagacatatttgctttcttgctagc
catagggtaaccatggccagcgccaccagcaatcgtggacctctctttatagtcatttta
cttcagattgccttcatttgttcagctcaaagaggcccagttggtccccgaggtacacct
ggcctcgctggccctgcaggcgtccctggaatcgacggcatagacggtgagagaggtgag
gatggcccaacaggtccccccggcctagacggcgacctaggtaaacccggatcagcagga
ttgccaggcgagccaggagctgacggattaacaggccccgacggagatcctggcccagat
ggccctattgggcaaaagggtgagcctggtgcgacaggaccccgtggatcagcaggttca
ggcccagatggacctcctggtccaccaggtgcaggaggaattccaggaggacttggacgt
ttagggcccctgggtgatgctggagttcaagggcctcctggtccacctggtccccctggg
cctcgaggtgctgccggatttcatgatggcagtggggagttgtgtcccaatgcctgccct
cctggctcgccaggccatcctggtcttccgggaatgaagggacataaaggagtaaaagga
gaatcaggtgaaccaggaaagcagggacacaagggtgaagagggtgaccagggggcctct
ggggaggtcggtgctcaaggccctacaggtcctcagggtataagaggaatcacaggcatg
atgggacctaaaggtgaaaggggtgctggtggacatgatggtgaaccaggtcctcagggt
ctgcaaggcgcaactggcgatcaaggtcagagaggcgttgtgggtgagactgggccaaaa
ggtgacgttgggtcgcaaggtccaagaggaatttcagggctcccaggttcaaaaggagaa
tccggattacctggcgtggatggacgtgatgggatccctgggatgccaggtacaaagggt
gactctggcaaaccaggtgctccaggtgaatctggacttcagggtcttccaggcttacct
ggttcttatggtgcaaagggtggtgctggtgataagggtgattccggagcctctggttta
cttggaacaatgggaatgctgggagccctcgaccttcccttggatgaaagaggaggcatg
caaagtttggtggaccagccatccggtaataaccctcaatggggagttttgataaagagg
gatcccttcatttctagaagaagcactgctgcaaagggtgaaagaggtgtgccgggtcca
tctggtcccacaggtacaccaggactccggggctcaaaaggtgatcctggtctgccaggt
cttcctggtcccccaggcctgcccggagttaaaggagacaggggtgctgttggtttggat
ggtcctaaaggagaacaaggtgatgctggatcagagggcacatctggtgataaaggtgat
cagggtaatcaaggagaaccaggacccaaaggatctactggtcaccctggtgagcctggc
agtcgaggccctgagggcagccgtggccagtctggcattgaaggaccctctggctcccct
ggacctcgcgggatgcagggagatcggggtgtgcctggcctgcctgggtcacaggggccg
gctggtaaagagcccagtgatcagcatataagacaagtttgtatgcgagttatgcaggaa
cagttagcccagctggcagccagcctccggagaccagaatcaggtgctgctggtctgcct
gggcgccctgggtctcctgggcctcctggccctgctggcgacagtggcttccctggacag
gccggcccacgaggattaccgggtctgaaaggacctcccgggctgctcggcctcaagggg
cctaaaggtgaaatgggtgaaaggggcgatagaggcatcacagtacgaggatcaaaaggc
ttgcctggagcacccggtctgccaggtgagcctggcagacctggatatggcagggaggga
cgtgatggtgaaagagggccccctggagtgcctggacagcctggtatccctggtcctcct
ggtccagctggaccttctggttactgtgatccgtcagcatgcaacttgcaagcgatcgct
gcacctcagtctctgaaggactccaatgtaaaaggaccttga
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