Polyodon spathula (Mississippi paddlefish): 121320140
Help
Entry
121320140 CDS
T07273
Symbol
apex1
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
121320140 (apex1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121320140 (apex1)
Enzymes [BR:
pspa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
121320140 (apex1)
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
121320140 (apex1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
121320140
NCBI-ProteinID:
XP_041114337
LinkDB
All DBs
Position
8:51451681..51464358
Genome browser
AA seq
316 aa
AA seq
DB search
MSKRAKKDARVEDAEPDNGAGSEAKRSKKAGGKAVKEPEAPVLYEDSPDKLSTPDGRAAN
LKISSWNVDGLRAWVKKNGLDWVREEDPDIICLQETKCSEKALPADITDMPEYPHKYWAA
SDEKEGYSGVAMLCKTKPINVTFGIGKEEHDKEGRVITAEFPSYFLVTAYVPNAGRGLVR
LDYRKGWDVDFRAYLTELDQRKPLILCGDLNVAHQELDLKNPKTNRKSPGFTPEERQGFS
ALLAAGFVDSFRHLYPERPGAFTFWTYMMNSRSKNVGWRLDYYVLSQALLQNLCDSKIRS
KVMGSDHCPITLHMTL
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaagagccaagaaggacgcgagagtggaggatgcagagccagataacggagca
ggctcagaggctaagcgcagtaagaaggcaggagggaaagcagtcaaggagccggaagcc
ccagtgctgtacgaggactctccagataaactgagcaccccagacggccgagccgccaat
ctgaaaatcagctcctggaatgtggatgggctgcgcgcctgggtcaagaagaacggtctc
gactgggtgagggaggaggaccccgatatcatctgcctccaggaaacaaagtgttctgag
aaagctctgcctgctgatatcacagacatgcctgaatacccacacaagtactgggctgct
tctgacgagaaggagggctacagtggggtggccatgctctgcaagaccaagcccatcaac
gtgaccttcggaattggcaaggaggagcacgataaggaaggccgggtcatcacggcagag
ttcccttcctacttcctggtgacggcctacgttcccaacgctggccgcggcctggtccgg
ctggactaccgcaagggctgggatgtggatttccgagcctacctcaccgagttagaccag
cgcaagcccctcatcctgtgcggggatctcaatgtagcccaccaggagctcgacctgaag
aatcccaaaaccaaccgtaagagccccggcttcacccccgaagagcggcagggcttcagc
gctctgctggccgcgggcttcgtggacagctttcgccatctctacccagagcgcccaggt
gccttcaccttctggacctacatgatgaactcacgcagcaagaatgtgggctggaggctt
gactactacgtgctgtcccaggccctgctgcagaacctctgtgacagcaagatcaggtcc
aaggtcatgggcagcgaccactgccccatcacactgcacatgaccctgtga
DBGET
integrated database retrieval system