Polyodon spathula (Mississippi paddlefish): 121321843
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Entry
121321843 CDS
T07273
Name
(RefSeq) nephronectin-like isoform X1
KO
K06824
nephronectin
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04512
ECM-receptor interaction
pspa04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121321843
04518 Integrin signaling
121321843
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Gene cluster
GFIT
Motif
Pfam:
EGF_CA
MAM
cEGF
FXa_inhibition
EGF_3
EGF
EGF_PEAR1L
JAG1-like_EGF2
EGF_2
Plasmod_Pvs28
EGF_DL_JAG
hEGF
EGF_TEN
Motif
Other DBs
NCBI-GeneID:
121321843
NCBI-ProteinID:
XP_041117047
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Position
1:complement(70347004..70395535)
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AA seq
610 aa
AA seq
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MELLIKLVIVSTLYLGAAGEFDGRWPRRVSSSNGLCRYGARVDCCWGWTRRSWGQCQPLY
RLVGIRCQPQALCQPGCKHGECVGPNKCKCYPGYTGKTCNQDEQEYVTPPMWDSHPPLFP
PMDHQPAGAPAADLNECGLKPRPCKHRCMNTYGSYKCYCLNGYMLMPDKTCGNARSCSMA
NCQYGCDVVKGEIQCHCPLPGLQLGPDSRTCVDVDECATGRAVCPRFRKCINTFGSYICK
CHEGFDLKYINGKYQCIDVNECLSSVHHCSSFAMCYNTPGSYKCKCKEGFRGTGFDCKPI
PKVIIDPPIPGKKENMRNMKNTTNSNGCQNKIPDPECDRKITTTRLPVTTKRTVTTTKIK
TTTTKSIRSTSPPRRTTPAPIVTRKPAVVTTTKMPIVTTAPERDTTVDNRIRNEVSPKPR
GDVHILRNPGENNIVIGSIELGETADEEEAQDDSDVILHSCSFDHGLCGWLRDRESDLHW
ETSSDAAGGKYLTIPEVFGKRGGRAAQLALPLWQPVDSGELCLSFRHKLSGQHSGSMQVY
VRRNGVQGPAVWVRTGEHDWRHTQITLWGAGLESIILKGERLSERLGEISLDDVSLRRGS
CTGEHTLRRH
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggagttattgattaagctggtgattgtgtcaacgctgtatctgggagcagctggtgaa
tttgacggcaggtggcccagacgggtgtcctcctcaaatggactctgccgctacggagcc
cgcgttgactgctgctggggatggacacggcggtcctggggccagtgtcagcctctctac
agattagtcgggataaggtgccagccccaagctctctgccagcctggatgtaaacatggg
gagtgtgtgggaccaaacaagtgcaaatgttacccaggctacacagggaaaacttgtaac
caggatgagcaggagtatgttactcccccaatgtgggacagtcaccctcctctctttcca
cccatggatcaccaaccagcaggtgcacctgcagcggatctcaatgagtgtggactgaag
ccacggccttgtaaacacaggtgtatgaacacctatggaagctacaaatgttactgcctg
aatggatacatgctcatgcctgataagacatgtggaaatgcccgctcctgctccatggca
aattgtcagtatggctgtgatgtggtaaaaggagagatccagtgccattgccccttacct
gggctacagctgggccccgatagcaggacctgtgtggatgtggatgaatgtgccactggc
agagctgtgtgtcctagattccggaagtgcatcaacacctttggaagttacatctgcaaa
tgtcatgagggattcgacctaaaatacatcaacggaaaataccagtgcatagatgtgaat
gagtgtctttcctctgtgcaccactgcagcagctttgccatgtgttacaacacaccaggc
tcttacaaatgcaaatgcaaagaaggcttcagggggactggcttcgactgtaaacccata
cctaaagtcataattgacccaccaataccaggcaaaaaagaaaatatgagaaacatgaag
aacaccacgaacagcaacggatgtcaaaataaaatccctgatcctgaatgtgacagaaag
ataaccaccacacgtctacccgtaaccaccaaaagaactgtaactaccactaaaataaaa
accacaaccaccaaatccatcagaagtacttcacctccaaggaggaccaccccagccccc
attgtcaccaggaagcctgcggtggtcaccaccaccaaaatgcctattgtgactacagct
ccagagagagatactactgtggacaacaggatacgtaatgaggtctcccctaaaccgaga
ggggatgtgcacattcttcggaaccctggcgagaacaatatcgtaattggaagcatcgaa
ctgggagagactgctgatgaggaggaagcccaagatgattcagatgttattctgcacagt
tgtagctttgaccatggtctgtgtggatggctcagggacagagaaagtgacctacactgg
gaaacaagctcagatgctgcaggtggaaaatacttgacgattcctgaagtgtttggtaag
cgaggtggaagagcagcccagttggctcttcctctgtggcagccagtggactcgggggag
ctgtgcctctcgttcagacacaagctgtcagggcaacactccggttccatgcaggtgtat
gtgaggaggaatggggtacaaggccctgcagtgtgggttaggactggtgaacatgactgg
aggcacacccagatcacactgtggggggctggcttggaaagtatcatattgaaaggtgag
cgattaagtgagcggcttggagagatcagcctggacgatgttagtctgagaagaggctcc
tgcactggggaacacactctgagaagacattaa
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