Polyodon spathula (Mississippi paddlefish): 121322258
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Entry
121322258 CDS
T07273
Name
(RefSeq) sodium channel protein type 2 subunit alpha-like
KO
K04834
voltage-gated sodium channel type II alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pspa04040
]
121322258
Ion channels [BR:
pspa04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
121322258
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
HB_ELP1
Motif
Other DBs
NCBI-GeneID:
121322258
NCBI-ProteinID:
XP_041117883
LinkDB
All DBs
Position
10:complement(37785037..37842525)
Genome browser
AA seq
1992 aa
AA seq
DB search
MAQRLVPPGPESFRLFCRESLDAIEKRIAEEKAKKPKGDRRDNDDENGPKPNSDLEAGKS
LPFIYGDTPKGMDSEPLEDLDPYYMNEKTFIVLNKGKTIFRFNATPALYILSPFNPLRKL
AIKILVHSMFSMLIMLTIMTNCTFMTLSNPPDWAKNVEYTFTGIYTFESLLKILARGFCI
GKFTFLRDPWNWLDFSVIVMAYVTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCIRWPPAESGPSLNFSLINTMDVN
GTVLNLAENTFNWTAYINDKTNYYFKKGHRDALLCGNGSDAGQCPEGFTCLKGGRNPDYG
YTSFDTFGWAFLSLFRLMTQDFWENLYQQTLRAAGKTYMLFFVLVIFLGSFYLVNLILAV
VAMAYDEQNQATLEEAEQKEAEFQAMLEQLKKQQEDAQAAAAAAANEYGEYSGGCGVTES
SSEASKLSSKSAKERRNRRKKRKQKYEDEEKGDTDKFHKSESEDSIKRRGFGFSFDGNRL
SYEKRYSSPHQSLLSIRGSLISPRRNSKASLFSFRVRRDVGSENDFADDEHSTFEDGESR
RGSLFVPHMLERRNSNISQTSRSSRVMLPINGKMHCNVDCNGVVSLMGGPSGPTSPVGCL
LPEATTTTETETKKKRSGSHQMSMDFLDEPTARQRALSVASILTNTMDELEESRQKCPPC
WYKFANTFLVWDCSPNWLRIKTIVNLIVMDPFVDLAITICIVLNTLFMAMEHYPMTTEFN
NVLSVGNLVFTGIFTAEMIFKICAMDPYYYFQEGWNIFDGIIVSLSLMELGLANVEGLSV
LRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYR
DCVCKIDENCELPRWHMFDFFHSFLIVFRVLCGEWIETMWDCMEVASQSMCLIVFMMVMV
IGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLQIAVGRIQRGIDFTKKTLREFFQNT
CIRNKKVLNEIKPLGELHNIKDSCISNHTTVELIKEPDFHKDGNGTTSRIGSSVGKYMID
ESDCMSFIHNPSLTVTVPIAVGESDFENLNTEEFSSESDIECSKEQLNQFSSSEGSTVDI
QPLGEGEPIEVEPEEALEPEACFTEGCVRKFQCCQVNIEKGKWKMWWNLRKTCFRIVEHN
WFETFIIFMILLSSGALAFEDIYIEQKKTIKIMLEYADKVFTYIFILEMLLKWVAYGFVK
YFTNAWCWLDFLIVDVSLISLTANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVN
ALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYHCVNTTDGERFPISVVYNKSECLM
LSQSARWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRNLEEQPDYEVNLYMYL
YFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQK
PIPRPTNKFQGLVFDFVTKQVFDITIMILICLNMITMMVETDDQTEQMQNNLSRVNLVFI
ILFTGECVLKMISLRHYYFTIGWNIFDFVVVILSIVGMFLAEIIEKYFVSPTLFRVIRLA
RIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKESGI
DDMFNFETFGNSMICLFQITTSAGWDGLLAPILNRGQPDCDSEIDHPGSSIKGNCGNPSV
GILFFVSYVIISFLIVINMYIAIILENFSVATEESAEPLSEDDFEMFYEVWEKFDPDATQ
FMEYAKLSNFADALEPPLRVPKPNKIQLIAMDLPMVSGERIHCLDILFAFTKRVLGEGGE
MDALRGQMEERFMASNPSKVSYEPITTTLRRKQEHMSAIVIQRAFRCYLIRRTVKKASYL
FKANIKAGENLLEREKMMVIDKFNDNSTTEKTDVTPSTASPPSYDSVTKPDKYERDKAEK
DDRGKQFREYTK
NT seq
5979 nt
NT seq
+upstream
nt +downstream
nt
atggctcaacggcttgtaccgccaggacctgaaagcttccgcctgttttgccgagaatct
cttgatgctattgaaaagcgcattgcagaggagaaagcaaagaaacccaaaggggaccgt
cgagacaatgacgatgaaaatggcccaaagccaaacagtgacttggaagctggaaaatca
ctgccatttatttatggtgacacccctaaaggaatggattcagaacccttggaggatctg
gatccatattacatgaatgaaaaaacctttatagtattgaacaaagggaagacaatcttc
agatttaatgccacacctgccttgtacatcttaagtcctttcaatcctcttagaaaacta
gcgattaagatattggtacattcaatgttcagcatgcttatcatgttaactatcatgacc
aactgtacgtttatgaccttgagcaaccctcctgattgggcaaagaatgtagagtacaca
ttcactggaatttacacatttgaatcacttctaaaaattcttgcaaggggcttctgtata
ggtaaatttacattccttcgagacccatggaactggctggatttcagcgtaatcgtcatg
gcgtatgtaacagagtttgtaaacctaggcaatgtttcagctcttcgaactttcagagta
ttgagagctttgaaaactatttctgtaatcccaggcctgaagacaattgtgggcgccctg
atccaatcggtgaagaagctctcggatgtaatgattttgactgtgttttgtctaagtgtt
tttgcactaatagggcttcaactttttatgggcaatttaagacaaaaatgtatacgatgg
ccacctgctgaatcgggtcccagtttaaatttctccttgatcaacacaatggatgtaaat
ggaacagtgttaaacttagctgagaacacattcaactggacagcatacatcaatgacaaa
acaaattattacttcaaaaaaggacatagggatgctctgctgtgtggcaatggcagtgac
gcggggcaatgccctgaaggttttacatgtttaaaagggggcagaaacccggattatgga
tacacaagttttgacacatttggttgggctttcttgtcattgtttcggttaatgactcaa
gacttctgggaaaatctgtatcagcagaccctacgagcagctgggaaaacatacatgtta
ttctttgtgctggtcattttcctgggatcattctaccttgtgaacttgattctggctgta
gttgccatggcctatgacgaacaaaaccaagcaacactcgaagaagccgaacagaaggaa
gcagaattccaggcaatgcttgagcaactgaagaaacagcaagaagatgcacaggctgcc
gctgcagcagctgccaatgagtatggtgagtacagtggaggctgcggagtgactgagagc
tcctcagaggcatcgaagctcagctccaagagtgccaaggaacggagaaacagacgcaaa
aagagaaaacagaaatatgaggatgaggagaaaggggacactgataaatttcacaaatca
gaatctgaagacagcataaaaagaagaggctttggcttttcttttgatggaaacaggctt
agctatgaaaagagatattcctccccgcaccagtctctgctgagtattcggggctccttg
atttctccgcgacgcaacagcaaagcaagtctgttcagcttcagagtgcgtagggatgta
ggctccgagaatgactttgcagatgacgaacacagcacctttgaagatggtgaaagcaga
aggggttcactctttgtgccgcatatgctggagagacgcaacagtaacatcagccagacc
agtagatcatccagagtaatgcttcccatcaatggaaagatgcactgcaacgtggattgc
aatggagtggtttcgctaatgggtggaccatcggggccaacctcacctgttggatgcctt
ctgccagaggccaccaccacaactgaaactgagaccaagaagaaaagatctgggtctcat
cagatgtcaatggattttttagatgagcctactgcaaggcaaagagctttaagtgtggca
agcattttaacaaacaccatggatgaactcgaagaatcacgacagaaatgcccaccatgt
tggtacaaatttgctaacactttcctcgtatgggactgcagcccgaactggcttcgaatc
aagacgatagtgaatttaattgtgatggatccttttgtagaccttgcaatcactatctgc
attgttctgaacacattattcatggccatggagcattatccaatgaccacggagtttaac
aatgtgctgtctgtgggaaatctggtgtttactggaatcttcactgcagaaatgattttc
aaaatttgtgctatggacccctactattattttcaagaaggctggaacatttttgatggt
attattgtgagcctaagcttaatggagcttggtctggcaaatgttgagggactgtctgta
ctgcgatcattcagactgctgagggtgtttaaattagccaagtcctggccaacgttgaac
atgctcatcaagatcattggcaattctgtgggagctcttggaaacttgactttggtgctc
gccatcatcgttttcatttttgctgtggtgggaatgcagctgttcggaaagaactacaga
gactgcgtttgcaaaattgatgagaattgcgagctaccacgctggcacatgtttgatttc
tttcattccttcttgattgtgttccgagtcctgtgtggagagtggattgagaccatgtgg
gactgcatggaggtagctagtcagagcatgtgcctcattgtattcatgatggttatggtg
attgggaatcttgtggtattgaatttgttcctggctttgcttctgagctcatttagtgca
gacaatcttgctgctacagacgatgatagtgaaatgaacaatctacagattgccgtggga
aggattcagagaggcattgacttcacgaaaaaaaccctcagagaattctttcaaaacacg
tgcataagaaacaagaaggtgcttaatgaaatcaaaccccttggagagctgcacaacata
aaagacagctgcatttccaatcacacaacagtcgaattaatcaaggagccagatttccat
aaggatggcaatgggacaacaagtagaataggcagcagtgtgggaaagtacatgatcgat
gaaagtgattgcatgtccttcatccataatcctagcctcacggtgacagtgccaattgca
gtgggagagtccgactttgagaacctcaacacagaggaattcagcagtgaatcggacatt
gaatgcagcaaagagcaactaaatcagttcagctcctctgagggaagtactgtcgacatc
caaccacttggagaaggagagccaatagaagtggaacctgaggaagccctcgagcctgaa
gcctgtttcaccgaaggatgtgtacggaagtttcagtgctgtcaggtgaacatagagaaa
ggcaaatggaaaatgtggtggaacctgagaaaaacgtgtttccggattgtcgaacacaac
tggtttgaaactttcatcatctttatgatccttctcagcagtggtgcgctggcctttgaa
gatatttacattgagcagaagaagaccatcaagatcatgctggaatatgctgataaagtc
tttacctacattttcattttggaaatgcttctgaagtgggtggcctatgggtttgtgaag
tattttaccaatgcctggtgctggctggacttcctcattgttgatgtgtctttaatcagc
ttaacagccaatgccttgggctactcagaactgggtgccattaagtctcttaggacgctg
cgagcattgagacctttaagggccctgtcacggtttgaagggatgagggtggtcgtcaat
gctcttcttggagcaattccatccatcatgaatgtgctcctggtctgtcttatattctgg
ctcatttttagtataatgggtgtgaatttgtttgctgggaagtactatcactgtgttaac
accacggatggagagcgcttcccgattagtgttgtttacaacaagagtgaatgcctaatg
ctcagccagagtgcccgctggaagaacgtgaaaatcaactttgacaatgtgggggccggt
taccttgctctactgcaagtggccacattcaaagggtggatggacattatgtatgcagct
gtggattcacgtaatttggaggaacagcctgattacgaagttaatctgtatatgtacctg
tactttgttatatttataatctttggatccttcttcacattaaaccttttcattggtgtc
atcattgacaacttcaatcaacagaagaaaaagtttgggggtcaggatattttcatgaca
gaggaacaaaaaaaatactacaatgccatgaagaagcttggctcaaagaaaccacaaaag
ccaattcctagaccaacgaacaagttccaaggactcgtatttgattttgttacaaaacaa
gtcttcgatattaccattatgattctcatctgccttaatatgattaccatgatggtggaa
acagatgaccagactgaacaaatgcaaaataatctttccagggttaatttagtcttcatt
atacttttcactggtgaatgtgttctgaagatgatttcactccgacactattactttacc
atcggctggaacattttcgactttgtggtggtgattctctccatagttggcatgtttctt
gcagaaataattgaaaaatactttgtttcgccaaccttgttcagagttattcgacttgcc
agaattggccgcatccttcgacttattaagggtgctaaaggaatccgcacacttctcttt
gccttgatgatgtcacttcctgccttgttcaacattggtctactgctctttttagttatg
tttatctatgccatttttggcatgtcaaattttgcctatgtcaaaaaggaatctggtata
gatgacatgttcaattttgaaacctttggcaacagtatgatctgcttgtttcaaattaca
acatctgctggttgggatggtttgctggctcccattcttaacagagggcagccagactgt
gacagcgagatagatcatccaggcagttctataaaaggaaattgtggaaacccatctgtg
gggattctcttctttgtcagctacgttattatatcttttctaattgtgataaacatgtac
attgccattattctggaaaactttagcgtcgctactgaggagagtgcagaaccactaagt
gaagatgattttgaaatgttctatgaagtctgggagaagtttgaccctgatgcgactcag
tttatggaatatgctaaactgtccaattttgctgatgctttggagcctccgcttcgtgta
ccaaagccaaataaaatccagctcattgccatggaccttcccatggttagtggggagcga
attcattgtcttgacatattgtttgctttcacaaaacgtgtgttgggggagggtggagaa
atggatgctctccgcgggcaaatggaagaacgcttcatggcatcaaatccatccaaggtc
tcttatgaaccaataactacaactctacgtcgcaagcaggaacacatgtctgccattgtc
attcagagagccttcagatgctacctaatcagacgaacagttaaaaaagcctcttatttg
ttcaaagcaaatatcaaagcaggcgaaaaccttcttgagagagaaaaaatgatggtgatt
gataaatttaatgacaactcaaccacagaaaaaacagatgtaacgccttccacggcttcc
ccaccttcctatgacagtgtgaccaaaccagacaaatatgagagagacaaagcagagaag
gatgacaggggcaaacagttcagggagtatacaaagtaa
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