Polyodon spathula (Mississippi paddlefish): 121323194
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Entry
121323194 CDS
T07273
Name
(RefSeq) protein transport protein Sec24B-like isoform X1
KO
K14007
protein transport protein SEC24
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121323194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121323194
Membrane trafficking [BR:
pspa04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
121323194
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_helical
Sec23_BS
zf-Sec23_Sec24
Gelsolin
Sen15
DUF3246
Motif
Other DBs
NCBI-GeneID:
121323194
NCBI-ProteinID:
XP_041120028
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All DBs
Position
1:complement(82287791..82322911)
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AA seq
1219 aa
AA seq
DB search
MSVPGFNPSPAAGLSRHPTPNGGAAPLYQNGPGQTYPLMQSQAGYGAPHPHYNSAPGHYA
QMPKKAPPVNNQYGMNYYQNNNQQPMQTTARPEMAPVFRAPQVHSSRPPVSSQVVGPTSN
VSMSSASPLHTGPPQPGSYPASAGYYGGSMPLVGPAGTSAQGFPPLSALATVPSAPNSAY
PTVSFPSAPGSSQYGTLPSSQTSAASHNLVGTGPTPSSVSTAPRAPLQQVSLGHSVTSSW
PSSAAVSAPPSYSGNFPGTIAAINSKANTVPPSSANHLDQSCQPPWNRTFGAVHPTAGSP
APGRLATVTPTPPVSASLAQHEGMQYGNVANSSASSAPAPLSSSSDDEDDDDEGEEDEEA
GADSSSTTSSASPVPNNYEALEGGSYPDTSSKLPPGPPVSQASKVAKPFGYGYPSLQPAY
QQTPAPCSHPTNFQSFNPSSPGYQQDSKPYPTMNQLSADLGGLSLPALQLEALRPVNLMQ
DRNILPSTEVQAPLPNLSTDLKKANCSSDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFR
DLTQLPVITSNTIVRCRSCRTYINPFVSFLDQRRWKCNLCYRVNDVPEEFMYNPLTRSYG
EPHKRPEVQNSTVEFIASSDYMLRPPQPAVYLFVLDVSHNAVEAGYLNVLCQSLLENLDK
LPGDTRTRVGFITFDSTIHFYNLQEGLSQPQMLVVSDIEDVFLPTPDSLLVNLKESKELV
KDLLNALPCMFTNTRETHSALGPALQAAFKLMSATGGRVSVFQTQLPSLGAGLLHSREDP
NQRSSAKVVQHLGPATDFYKKLALDCSGQQIAVDLFLLSSQYSDLASLACVSKYSAGSIF
YYPSFHHVHNPVQAEKFQKDLRRYFTRKIGFEAVMRIRCTKGLSIHTFHGNFFVRSTDLL
SLANVNPDSGFAVQMSIEESLADTALVCFQAALLYTSSKGKRRIRVHTLCLPVVSQLNDV
FAGADVQAITCLLANMAVDRAISSNLSDSRDALVNAVVDSLSAYRSATSSLQQSGVIAPY
SLRLFPLYVLALLKQKALRTGTSTRLDDRVFAMCEFKCQPLQQIMRMIHPNFYRIDNLTD
EGALHVNDSIVPQPPILQLSAERLTREGAFLMDCGSVLYLWVGKSCDVTFISDVLGYPNH
ASIPQNMTQIPELETPSSERTRSFITWLQENRSFNPVLCIVKDDTSAKTNFFQLLIEDRT
EAALSYYEFLLHIQQQISK
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtgcctggatttaatccgagccctgccgccggtctcagcagacacccgacgcca
aatggaggagcggctcccctctatcaaaacggcccaggccagacttacccattgatgcag
tcccaggcaggatatggcgcacctcatccacactacaactcggctccaggacactatgcc
cagatgcccaagaaagcccctccagtgaacaatcagtatggcatgaactattaccagaat
aacaaccagcagccaatgcagactactgccagaccggaaatggcgcctgtatttcgggcc
cctcaagtacacagtagcaggcctcctgtcagttctcaggttgtgggccccacctcaaat
gtctccatgtcttcagctagccctttacatactggtcccccccaaccaggttcttaccct
gccagcgctggatactatggcggttctatgcccttggtgggaccagctggcacctcagct
cagggattccccccactttcggctctggccactgtgcccagtgcacccaactctgcttat
cccactgtctccttcccttctgcacctgggagtagtcaatatggcacactgccttcctcc
cagacttctgctgctagtcataacttagttggtactggacctactcctagtagtgtgtca
acagccccccgagcacctctccagcaggtttctttaggacacagcgttacttcctcgtgg
ccctcgtctgctgcagtgtctgctccaccaagctacagtggaaactttcctgggaccata
gctgccattaacagcaaggcaaatacagtcccaccttcatctgctaaccatcttgaccaa
agctgtcagcctccttggaatcgcacatttggagcagttcatcctacagctggcagccct
gcacctgggagactagctacggtcaccccaactccacctgtctctgcttccctagcacag
catgaaggcatgcagtatggaaatgttgctaatagttctgctagctctgcaccagctccc
ttgtcatcgagttctgatgatgaggatgatgacgatgagggtgaggaggatgaggaagca
ggtgctgacagttcttctacaactagcagtgcgtctccagtccccaataattatgaggcc
ttggaaggggggagctacccagatacctcttcgaaattacctcctggaccccctgtttca
caggcttctaaagttgctaaaccctttggctatggatacccgtctctccagcctgcatac
caacagaccccagcaccatgctcccatccaaccaacttccagtcctttaaccccagcagt
cctggctatcagcaggactccaagccttaccccactatgaaccagttatctgctgacttg
gggggactgagcctacctgccctgcagctggaagcactaaggcctgtgaatctaatgcaa
gatcggaacattcttcccagtacagaagtccaagctcctttacctaatctcagcacagac
ctgaagaaagcaaactgcagttcagactctttccgatgcacactgacaaatattcctcag
acacaagcattgttaaataaagccaaactgccccttggcttgcttcttcatcctttcaga
gatcttacgcaattacctgtcataacgtccaacaccattgtgagatgccgctcttgcaga
acatacattaacccttttgtatcctttcttgaccaaaggaggtggaaatgtaatttgtgc
tacagagtcaatgatgttcctgaagaattcatgtacaatccattgacacgttcttatggt
gaaccacacaaacgtccagaagtgcagaactcgactgtggagttcattgcttcttcagat
tatatgcttcgccctcctcagcctgctgtttacctgtttgtgttggatgtttctcacaat
gctgtagaagctggttacctgaatgtactgtgtcagtctctgcttgaaaacttggacaag
ctacctggtgatacgaggacgagagtaggattcataacatttgacagcactattcacttt
tataacttgcaggagggattatcacagcctcagatgcttgttgtctcagatattgaagat
gtctttctacctacgcctgatagtttgctggtaaatctcaaggaaagcaaagagctggtg
aaggatttattaaatgcactgccctgcatgttcaccaacacaagagagacacacagtgca
ctgggacctgcccttcaggctgccttcaaactgatgtctgcgacagggggccgggtttct
gtgtttcagacacagttgccctctttaggagccggtcttctgcactccagagaagatccc
aaccaaagatcaagcgccaaggttgtgcaacatctgggtccagccactgatttttataag
aagctggcactagactgttctggacagcagatcgcagttgaccttttcctcttgagttcc
cagtactcggacttggcatccttagcgtgtgtgtccaaatattcagcaggaagcattttt
tactacccgtctttccatcacgttcacaatcctgtccaggcagaaaaattccagaaagat
ctcagacgctatttcaccagaaagattggttttgaggccgtcatgagaatacggtgcacc
aaaggtctttctatccatactttccatggcaatttctttgtgcgttctactgacctgctt
tctcttgcaaatgtcaatccggactctggctttgctgttcagatgtctattgaagaaagt
ctggctgatacagccctggtttgctttcaagctgctcttctttacacctccagtaaaggc
aagcgaaggattcgggtgcacactttgtgtttgccagtggtgagccagttgaatgatgtg
tttgcaggagctgatgttcaggcaattacatgcctgttggcaaatatggctgttgatcga
gcgatttcctccaatctgtcggactcccgtgatgccctggtaaacgctgtggtggattca
ctctctgcttaccgctcagccacttccagtttgcaacagtctggcgtgatagcaccgtat
tccctcaggctctttcccctttatgtcctggctctgctcaaacaaaaagcactgagaact
ggtactagcactagactggatgaccgagtgtttgcaatgtgtgagttcaagtgtcagcct
ctgcaacagatcatgcgcatgattcatcccaatttctacagaatagacaatctcactgat
gagggagcactccatgtcaatgattccatagtaccccagccacctattctccagctttct
gctgagagacttaccagagaaggtgcattcctcatggattgtggatctgttctttatctg
tgggttggcaaaagctgtgatgtgacttttataagtgatgtgcttggctatcccaaccat
gcttctataccacagaatatgacacagattccagaacttgaaaccccatcttctgaaaga
acacgatcttttattacctggctccaagagaacagatcgtttaatccagttctttgtatt
gtgaaggatgatacctctgccaagactaacttcttccagcttttaattgaagaccgaaca
gaagcagctttgtcttattacgagtttctcctccacattcagcaacagatctccaaatag
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