Polyodon spathula (Mississippi paddlefish): 121325266
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Entry
121325266 CDS
T07273
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121325266 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121325266 (cnot1)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121325266 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121325266 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
Not1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
121325266
NCBI-ProteinID:
XP_041123610
LinkDB
All DBs
Position
13:complement(41126508..41156515)
Genome browser
AA seq
2278 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVVFGLALLNSSSSDLKGFAAQFVKQKLPDLLRSYVDADVGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIEAFIKTLCRDFPQERCPVVLAPLLYPEKRDFLMDRIL
PDSGGLAKTMMESSLADFMQEVGYGFCASLEECRNIIMQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKTDGSQAHTWNVEVLIDVVKELNPNLNFKEVTYE
LDHHGFIIRDSKALQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFVQHSLMNPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLSEVGQYEQVKQLFNFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQASVTFLKRRCPSIMGGLAPEKEQPKSAQLPPETLATMLACMQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSVSPLQI
DPLSGMASLNISGSAVSHPQSMQGFPTNLSSAFSNPQSPAKAFPALTNPSQTTPFSGIGG
LSSQLPGSLGSSSLTSMGSGLGIPTVNSDPFGQRKMSTSGLNPPTFQQSKIMPSDLSQVW
PEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLR
NLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYF
GIAALDRFKNRLKDYPQYCQHLASITHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSIT
TPGSLALAQAQAQAQVPPKAPLPGQVSTIVTTSTTPTVAKTTTITRPTGVSFKKDVPPSI
NTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWV
SQYLVMKRVSIEPNFHSLYSNFLDTLKNQDFVKMVLSETYRNIKVLLTSDKAAANFSDRS
LLKNLGHWLGIITLSKNKPILYTDLEIKSLLLEAYVKGQQELLYVVPFIAKVLESSVRSM
IFRPQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKDKLK
ALDEQLSAPKKEAKPPEEMLPIVPPGEFLPFAAAPSTPATTTTCTATGPPTPQFSYHDIN
VYALAGLAPHINFNQNIPLFQAHLQLKQYVRQAIERAVQELVHPVVDRSIKIAMTTCEQI
VRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTQQ
QREMMEQAAAQIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDP
VVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQFS
PAQQPAWATDDVAQIYDKCIADLEQHLHAIPPALAMNPQTQALRSLLDAVVVARNSRETI
AALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGSQWCNKQITRCLIE
CRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSV
SHITEADLFHTIETLMRTSAHSRANAPEGLDDGYSVLAETPSNSKLASVAEDHRLPQLME
VVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRD
STKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAK
CYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYH
RIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARM
LAHTPQQKGWPMYAQLLIDLFKYLGPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLC
DYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGV
MPPQFKKDLDSYLKTRSPVTFLSELRSNLQVGGAILGPWKHLQHSDTSLDQVNIFNCL
NT seq
6837 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgattcgctctcgctggccttgtctcaaatcagttacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacagcatattgtgaatcgacacggc
cccgaggcagacaggcatttattacgctgtctattctcgcatgtggattttagtggcgat
ggtaaaagcagcggcaaagattttcatcagacacagtttttgatccaggagtgtgtgtcg
cttataaccaagccaaattttatctcaacactgtcctacgctattgacaatccattacac
tatcagaagagtttaaaaccttcaccccatttgtttactcagctgagtaaagttctcaag
ttaagtaaggttcaagaggttgtttttggccttgccttgttgaattcttccagctcagat
ctgaaagggtttgctgcccagtttgtgaaacagaagctccccgatcttctgcgttcttac
gtggacgcggacgttgggggtaaccaagaaggtggcttccaggatattgcaatagaggtc
ctgcacctgctcctctcccatctcctctttgggcagaagggagcctctggggtcggacag
gaacagattgaagctttcatcaagactctgtgcagagattttccgcaggagcgctgtcct
gtggtgcttgcaccactgctttaccctgaaaaacgggactttctgatggacaggatcctg
ccagactctggagggttagctaagaccatgatggagagttctcttgcagactttatgcaa
gaagttggctacggcttttgtgcaagtcttgaagaatgccgcaatataatcatgcagtat
ggagttcgggaggtcaccgcatcccaggtggccagagtcctgggcatgatggcccgcact
cactccggattgtcggatggcattccccttcagtccatctcagctcctggcagtgggatc
tggagcgatgggaaggataagactgatggatctcaggctcacacttggaatgtggaagtt
ttaattgatgttgttaaagaactgaatcccaatttgaacttcaaggaagtgacatatgaa
cttgatcatcatgggttcatcattcgggacagcaaggcactgcagatagtggtgtatggt
atccaaaggggactgggaatggaagtgttccctgtggatctcatttacaggccttggaaa
catgcagagggccagctgtcttttgttcaacattccctgatgaacccagatatcttctgt
tttgcggattacccctgtcacactgttgctactgatattttaaaagccccaccggaggat
gataaccgggaaatagcaacatggaagagtctggacctaattgaaagtctgttacgtctg
tcagaggtggggcagtacgagcaagtgaaacagctctttaacttccccatcaagcactgt
ccagacatgttagttttggccttgctacagatcagtacctcctggcacacactgcgccat
gaacttatctctaccctcatgccaatcttcttgggaaaccatcccaactctgccattatt
ttgcactacgcttggcacggacagggtcagtctccctctatccgtcagctgatcatgcac
tctatggcagagtggtatatgaggggagaacagtacgatcaggccaagctctcgcgcatt
ctggatgtggctcaggacctgaagtctctatccatgctgctaaatggtactccgttcgcc
tttgttattgaccttgctgcacttgcatctcgccgagaatacctcaaacttgacaaatgg
ctgacagataagatacgggagcatggggaaccctttatccaggccagtgtgacattctta
aagcgacggtgcccttccatcatgggaggcctggccccagaaaaggagcagcccaaaagt
gcacagctccctcccgaaacactggctaccatgctggcctgtatgcagtcctgtgcaggg
agtgtttcccaggaactgtcagaaacaattctgactatggtagcgaactgtagcaatgtc
atgaacaaagccagacaaccacccccaggagtcatgccaaagggacgtgctcctagcacc
agcagcttagatgccatttcccctgtacaggtatcggtctccgtctcccctcttcagatt
gatcccttgtctgggatggcgtctctgaatataagtggctctgctgtgtcccacccacag
agcatgcagggatttcctacaaacctgagttctgcattcagcaacccccagtcaccagcc
aaggcctttcctgctctcaccaatcccagccagacaacaccattcagtggcattggaggc
ctttcatctcaacttccagggtctttaggatcaagcagcttgacaagcatgggaagtgga
cttggaataccaaccgtaaacagtgatccttttggacagagaaagatgagcacatctgga
ttgaacccacccaccttccagcagagtaagataatgccttctgacctttctcaggtgtgg
cctgaggcaaaccagcactttagtaaagagattgatgatgaagccaacagctactttcag
cgtatttacaaccatccaccgcaccccaccatgtcagtggatgaggttctggagatgctg
cagagattcaaggactccaacattaagcgggagcgtgaagtgtttaattgcatgctgagg
aacctgtttgaggagtatcgtttcttccctcagtatcccgacaaggaactgcacatcact
gcctgcctctttggtggaatcattgagaagggactggtcacctacatggcgctggggctg
gccctgcgctatgtccttgaagccttaaggaaaccatttgggtccaaaatgtattacttt
ggtatcgctgccctagatagatttaaaaatagattgaaggattatccccagtattgtcag
cacttggcgtctattactcactttctacagttccctcatcatttacaggagtgtgtgcag
tatattgagtatgggcaacagtcccgagaccctccagtgaagatgcagggctcgatcact
acacctggcagtcttgcacttgcacaggctcaggctcaggcgcaagtgccccccaaggct
cctctccctggccaggttagcaccatagtaacaacatctaccacacccactgttgctaaa
accactaccatcacccgccccactggagtcagcttcaagaaggatgtgcctccttccata
aacacaaccaacattgacacgctgcttgtggccacagaccaaacagagagaatagtggag
ccaccagaaaatgttcaagagaagattgcctttatctttaacaatctttctcagtccaac
atgacacaaaaggtagaagaactgaaggagacagtgaaagaggagtttatgccttgggtt
tcgcaatatcttgtgatgaagagagtcagcattgagcccaactttcacagcctttactcc
aacttcctggatacactgaaaaaccaagattttgtcaaaatggttctaagtgaaacctac
agaaatatcaaggtcctactgacttccgataaggctgcggctaacttctctgatagatct
ctcctgaagaacctgggccactggctgggtatcatcacattgtcaaaaaacaaacccatc
ttgtatacagatttggaaataaaatctttgctgctggaagcttatgtaaagggacagcaa
gagcttctctatgtggtcccatttattgccaaagtgttggaatctagcgtgaggagtatg
attttcaggcctcagaacccatggactatggcaatcatgaatgtacttgcagaacttcac
caggaacatgacttgaagttgaacctgaagtttgagattgaagtactatgcaagaatctg
tccctggatataaatgaccttaagccaggaaacctgctgaaagacaaagacaagttgaag
gccctagatgagcagctttccgcaccaaagaaggaagctaaaccacctgaggaaatgcta
cccattgtcccacctggagaatttctcccctttgcagctgctccgtctacacctgccaca
acaactacgtgcacagccacaggtccaccaactccacagtttagttatcatgatattaat
gtctatgctctggcagggcttgcccctcacatcaatttcaaccaaaatatacccttgttc
caggcccacctgcaactgaagcagtatgtgcgtcaagctatagagagggcagtccaggag
cttgttcaccctgttgtggatcgctccatcaaaattgccatgaccacctgcgagcagatt
gtcaggaaggactttgctctggattctgaggagtcacgcatgcgtgttgccgcacatcat
atgatgcgtaacctgacagcaggcatggctatgatcacctgtagggaacctttgctcatg
agcatcgctactaatctaaagaacagctttgctgcagctctcagggctccaacccaacag
cagagagaaatgatggaacaggcagccgcacagatagcccaagacaactgtgaacttgct
tgctgctttatacagaaaacagcagtggaaaaagctggcccagaaatggataagaggctg
gcaactgaatttgagctgcggaaacatgccagacaagagggccgtcgatactgcgatcct
gtggtactgacctatcaagcagagcgcatgccagaacaaatcagacttaaggtcggtggc
gtggaccctaagcagctggctgtttatgaggagtttgcacgcaatgttcctggtttcctt
cccagcaatgatctctcacagcccacaggtttcctggctcaaccaatgaagcaattctcc
cccgcacagcaaccggcctgggcaacagatgacgtggctcaaatctatgacaagtgcatc
gctgatctggagcagcacttgcatgcaatccctcctgcattggctatgaatccccagaca
caggccctgcgtagtttgctagatgctgtggtggtggcaaggaattcacgcgaaaccatt
gcagcattgggcttactacagaaggctgtggaaggattactcgatgccacaagtggtgct
gatgcagacctcctgctccgataccgcgagtgtcacctgttggttctgaaagccctgcag
gatggccgtgcctatggctctcagtggtgcaacaagcagatcaccaggtgcttgattgaa
tgtcgtgatgagtacaaatacaatgttgaagctgtggagctgctgatcagaaatcatctg
gttaatatgcagcagtatgacctacacctagcccagtcaatggaaaatggccttcattac
atggctgtggcgttcgctatgcagttggtgaagttacttctggtggatgagaggagtgtg
agccacatcactgaagctgacctgttccacaccatcgagacactcatgagaaccagtgcc
cactccagagcaaacgctcctgagggcttggatgatggttactccgttctagctgagacc
ccctcaaatagtaaacttgcatctgttgcagaagatcacaggctgccccagctaatggaa
gtggtccgatcaaattatgaagcaatgattgaccgtgcacacggagggcctaatttcatg
atgcactctgggatctcgcaggcatcggaatatgatgaccctcctggcctgagggagaag
gcagagtacctactgagagaatgggtgaacctctaccactctgcagctgccggtcgagac
agcaccaaggctttctctgcctttgtgggacagatgcaccagcagggaatcctgaagact
gacgatctgataacccgtttcttccgactgtgcacggagatgtgtgtggagatcagttac
cgcgcacaggcagaacagcagcacaaccctgctgccagtgccgccatcatccgtgccaag
tgctaccataacctggatgcctttgttagactcattgcacttctagtcaaacactctgga
gaggcaactaacacagtgacaaagatcaacctactcaacaaggttctgggtattgtggtc
ggagtccttattcaggaccatgatgtccggcagactgagtttcaacaactgccctatcac
agaattttcattatgctgctgttggagttgaatgcaccagagcatgtgctggaaaccatt
aacttccagacattgactgctttctgcaacactttccatatcctgcggcccaccaaagct
cctgggtttgtgtacgcctggctggaactgatctctcaccgtatatttattgctaggatg
ctggcacatacaccccaacagaagggctggcccatgtatgctcaactgctgattgacctg
ttcaagtacctgggtcccttcttaaggaatgttgagctcaacaaacctatgcaaattctc
tacaagggcactctgcgtgttttgctggtcctcctccatgacttcccagagttcctgtgt
gattaccattatggcttctgtgatgttatcccacccaactgtatccaactgcggaacctg
attctcagtgcctttccacgcaacatgaggctgccggatccatttactcctaacctgaag
gtggacatgttgagtgaaatcaatattgctcctcgtattctcactaattttactggagtg
atgccacctcagtttaagaaggatttggactcctacctgaagactcgttctcctgtcact
ttcttgtctgagcttcgcagcaacctgcaggtagggggcgccattttgggtccctggaaa
catttgcagcacagcgacacatcattagaccaggttaacatttttaactgtctttga
DBGET
integrated database retrieval system
