Polyodon spathula (Mississippi paddlefish): 121325330
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Entry
121325330 CDS
T07273
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1-like
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
121325330
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pspa04040
]
121325330
Ion channels [BR:
pspa04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
121325330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
121325330
NCBI-ProteinID:
XP_041123692
LinkDB
All DBs
Position
13:40989044..41016944
Genome browser
AA seq
1566 aa
AA seq
DB search
MFSWVVKVVPHPPEPPRPLGEDVKPEPEPTPPPPVPVKKPVEVKEKVSQPQNITAKPAEK
PSEPAEKPSESAENPSEPAENPSAVSAEEKSASGGVLSWFSQGLDSVLPKPVDSLRLPRA
NAETEQQTKQEEQKNVSQAKENAAATTSEPEEEQGGVFSWIVQGLAKVVPQPEDRYKESE
EEENPTEVETAKEEEMPPPPVEGDCLVVRSLAEPGIQIIEVVSVSEVSKDAVSEIDNTAQ
TIPSFTASTASLFSWFKQGLEKVVPQPAELHAPLNTEAAQKQKPAEKKEEAHTAEPEAPA
KKTEVKEPPPPVKGIRAAQENCRADTPTEAAPPAEPAKVSEEASKPTSVVSWFVQGFEKV
VPQPVMRSKQDRTEEKDDGLSSQVRQISILPETVEDIVMEEVDSDWENEKQEEPEGQLTQ
LEPEKIPAEPVQEPEQEGQQEQMQEEDTETLAEQHQQPQKPPIQTCIVELEDAETQTERW
TPLLQQQQAEATEEKSQEEKAETEHSEEEELQVTYEQSEDEEGILECLVDVCPAEGFPSP
VREKPGHKVKVVQEEEPVRLPEPIQEVEPEQEVEISQEPEPIEEVEPEPEKEVGPVESVK
EPEPEKEEETQPEPEPEKEVEPVESVKEPEPEKEEETEPEPEPEKEVRPVEPMKEPKPVK
EEETQPEPEPEKEVGPVEPVKLPEPVKEEETQPEPEPENEVGPVEPVKLPEPVKEEETEK
EEVVARPVSTEQEEESQVIEEECDVMPKRNPDLELDHLVRESPQLPQSPSPSSPSSMQEL
PNVPRYQARSPRLHPLGVQSQVSGVVNPGFSKEERPPGRLREGSKVHPAVNVEDVDSPGS
LALPSIVHLPSAHSSTTLTVPGFPAAARRKKLFSQGDSVEETEITIKAWLSQCSLQPEEE
DRASSVTSQTSAIVNERLQELVKLFKGRTEKVKEKLIDPDSSSDEESPSASPAKKAPPPP
PPPEEKKEEEEEEHYCEMLCCKFKTMPWMMRLKEYRFPASIDPYTNLMYVLWLFFVTLAW
NWNLWLIPVRWAFPYQTPDNLYLWLLMDYLCDLIYILDIFIFQARLQFVRGGDIITDKKD
MRENYMKSYRFKMDVISLFPLDLLYLKLGVLSVLRFPRLLKYSAFYEFNDRLEAILSKAY
IYRVIITTGYLLYCLHCNACLFYWASDYEGLGSTKWVYDGVGNSYIRCYYFAVKTLITIG
GLPDPKTLFEIIFQLLNYFIGVFAFSVMIGQMRDVVGAATAGQTYYRACMDSTINYMNLY
KIPRSVQNRVKTWYDYTWQSQGMLDEQELLVQLPDKMRLDIAVDVNYQIVAKVALFEGCD
RQMIYDMLKRLKSVVYLPGDFVCKKGEIGREMYIIKAGEVQVVGGPDGKTVFVTLRGGSV
FGEISLLSVGGGNRRTANVMAHGFANLFILDKKDLNEILIHYPKSQKVLRRKAKKMLTKD
TKKAEMDEPKGVQHVIPPRPETPKLLKAARALTLQTRKSRSFSKLKMMKSSSVEPSSSVP
VPPASPMHRRCPVPQTRPGDDDADTENMVLETADGSMVLRMSPSHRGEEQVLTVEEVPKE
TEDPKQ
NT seq
4701 nt
NT seq
+upstream
nt +downstream
nt
atgtttagctgggtggtgaaagttgttcctcaccctcccgaaccaccccgacccctggga
gaggatgtgaagccggagcctgagcccacaccaccccctcctgtgccggtaaagaaacct
gttgaagtgaaagagaaagtttcccaaccccaaaatattacagctaaaccagccgagaag
ccatcagaaccagcagagaagccatcagaatcagcagagaatccatcagaaccagcagag
aatccatcagcagtgtctgcagaggaaaagagtgcttctggaggggtgttgagttggttc
tcccaggggctggacagtgtgttgcccaagccagtggacagtctgaggctgcccagggcc
aatgcagagacagagcagcaaaccaaacaagaggaacagaaaaatgtgtctcaggccaag
gagaatgcagcagccacaactagcgaaccagaagaagagcagggcggggtcttcagctgg
atagtgcagggactggccaaggtggtcccccagcccgaggacaggtataaagagtctgaa
gaggaggagaaccccacagaagtggaaacagccaaagaagaagaaatgccacctccgcca
gtggaaggcgactgtctggttgttcgttcacttgcagaaccgggaattcagattatcgag
gtagtgtcggtgtcggaggtttcaaaagacgccgtgtcagaaatcgacaatacagctcag
actatcccttccttcacagcaagcacggccagcctgttcagctggttcaaacagggactt
gagaaggtggtgccccagcctgcagagctgcacgcgcctctcaacacggaggctgcgcag
aagcagaagccggcagaaaagaaggaagaagcacatacagctgaaccagaagcgccagca
aagaaaacggaagtaaaggagccgcccccacctgttaaaggtataagagctgcacaggag
aactgcagggctgataccccgacagaggcagcaccacccgcagagccagcgaaagtctcg
gaagaagcttctaaaccaaccagtgttgtaagctggtttgttcaagggttcgagaaggtt
gttccacaaccagtgatgagatccaagcaggacaggacagaggagaaagatgatggactt
tcaagtcaagtgcgacaaatctctatcctcccggagactgtggaggatattgtgatggag
gaggtggactcggactgggagaatgaaaaacaagaagagcccgagggacagctgacccaa
ctggagcctgaaaaaatcccagctgagcccgtgcaggagccggaacaggagggccagcaa
gagcaaatgcaggaggaggacacagagaccctggcagagcaacaccagcagccacagaaa
ccaccgattcagacttgcatagtggagctggaagacgcagagacgcagacagagaggtgg
acacctctcctccaacagcaacaagcagaggccactgaggaaaaaagtcaagaagagaag
gcggagacagagcactctgaggaagaagagttacaggttacatacgagcagagtgaggat
gaggaggggatcttagagtgcttggtagacgtgtgcccagccgagggcttccccagccct
gttagagagaagccaggacacaaagtcaaagttgtccaagaggaagagccagtaaggtta
cctgaaccaatacaggaagtggagccagagcaggaagtggagatatcacaagaaccagag
ccaatagaggaagtggaaccagagccagaaaaggaagttgggcctgtagaatcagtgaag
gagcctgagccagaaaaagaagaagaaacacaaccagagccagaaccagaaaaggaagtt
gagccagtagaatcagtgaaggagcctgagccagaaaaagaagaagaaacagaaccagag
ccagaaccagaaaaggaagttaggccagtagaaccaatgaaggagccgaagccagtaaaa
gaagaagaaacacaaccagagccagaaccagaaaaggaagttgggccagtagaaccagtg
aagctgccggagccagtaaaagaagaagaaacacaaccagagccagaaccagaaaatgaa
gttgggccagtagaaccagtgaagctgccggagccagtaaaagaagaagaaacagaaaag
gaagaagtagttgcacgtcctgtgtccactgagcaggaagaagaatcgcaggtgattgaa
gaggagtgtgacgttatgcctaagcgcaacccagacctggagttagaccacctagtccgt
gaatcaccccaactccctcagagcccttccccctcctcccccagcagcatgcaagagctc
cccaacgtcccgagataccaggcccgcagcccccgcctgcaccccctcggagtccagagc
caggtgtcaggggtggtgaaccccggcttctccaaggaagagcgcccccccggccgccta
agagagggctccaaagttcacccggctgtaaacgtagaagatgtagactctcccggatct
ctcgcgctcccgtccatagttcacctgccgtcagcgcactcgagcacaaccctgaccgtg
cctgggttccctgccgcagccaggagaaagaagctgttttcccaaggcgacagtgtggaa
gagaccgagattacaatcaaagcctggctcagtcaatgcagcctgcaaccagaggaggaa
gatcgggcatcgtctgtgaccagccagaccagcgccatcgtgaacgagaggctccaggag
ctggtcaagttgtttaagggccgaacagaaaaagtgaaggagaagctgatcgaccccgac
agcagctcagatgaggagagcccctctgcatctcccgcgaagaaagctccaccacctccc
ccccctcccgaggagaagaaagaagaggaggaagaggagcattactgcgagatgctgtgc
tgcaaattcaagaccatgccctggatgatgcggctgaaggaataccgcttccccgcgagt
atcgacccctacaccaatctgatgtacgtgctgtggctgttctttgtgaccttggcctgg
aactggaacctatggctgatccccgtgcggtgggcgttcccctaccagactcccgataac
ctttacctgtggctgctcatggactacctgtgtgacctcatctacatcctggatatcttc
atcttccaggcccgcctgcagtttgtgcgcggcggggacattatcactgacaaaaaggac
atgagagaaaattatatgaaatcatacagattcaagatggacgtgatttcccttttcccc
ctggatctgctgtatttgaagctgggtgtgctgtcagtcctacgattcccacggttatta
aaatatagcgccttctacgagtttaacgaccgtctcgaggcaattctgagtaaagcatac
atttacagagttatcataacgacgggctatttgctgtactgcctgcactgcaacgcctgc
ctcttttactgggcgtcggactacgaaggacttggatcaacaaaatgggtttatgacgga
gtgggaaacagttatatccgctgttactactttgccgtgaagactctgatcaccattggg
gggctgcccgacccaaagaccctcttcgaaatcatcttccagctcctgaactacttcatc
ggagtgttcgctttttccgttatgattggtcagatgagagatgtggttggcgcagcgact
gcagggcagacttattacagagcctgcatggacagcaccatcaactacatgaacttgtac
aagatccctcgcagtgttcagaatcgggtcaagacctggtacgactacacctggcagtcc
cagggcatgctggatgagcaggaactgctggtgcagctccctgataagatgagactggac
atcgctgtcgatgtcaattaccagatcgtagcaaaggtggcgctctttgagggttgtgac
cgacagatgatttatgacatgctgaagaggttgaagtcagtggtgtacctgccgggggat
tttgtctgtaagaagggggagattggaagggagatgtacatcatcaaagccggggaggtg
caggtggtagggggtccggatgggaagaccgtctttgttacactgcgaggcggatctgtc
ttcggggaaatcagcctgctgtctgtaggaggagggaacaggcgcacagctaatgtgatg
gcacacggtttcgccaacctcttcatcctggacaaaaaggacctgaacgagattctcatc
cactaccccaaatctcagaaggtgctgcgcaggaaggccaaaaaaatgctaaccaaagat
accaaaaaggcagagatggatgagccgaagggggtacagcacgtgatccctcctagaccc
gagacccccaaactcttaaaagctgcacgcgcactcacccttcaaaccagaaagagccgg
tccttcagcaagctcaaaatgatgaaatccagctctgtggagccctccagctcggtgccc
gtgccacctgcctccccaatgcaccgccgctgtcccgtcccacagaccaggccgggggat
gatgacgcggatacggagaacatggtgttggagaccgcagacggttccatggtgctccgt
atgagcccttcacacagaggcgaggagcaggtcctgactgtggaagaggtgcccaaagag
acagaggaccccaagcaataa
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