Polyodon spathula (Mississippi paddlefish): 121326444
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Entry
121326444 CDS
T07273
Name
(RefSeq) LOW QUALITY PROTEIN: rap guanine nucleotide exchange factor 2-like
KO
K08018
Rap guanine nucleotide exchange factor 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04010
MAPK signaling pathway
pspa04517
IgSF CAM signaling
pspa04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121326444
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
121326444
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
121326444
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGEF
RasGEF_N
RA
cNMP_binding
PDZ
PDZ_6
RA_2
Motif
Other DBs
NCBI-GeneID:
121326444
NCBI-ProteinID:
XP_041125646
LinkDB
All DBs
Position
2:31073561..31213394
Genome browser
AA seq
1742 aa
AA seq
DB search
MRMASYVDNSFRQAVMKNPAERTQQDLEIVYSYLHGMEALSNLREHQLRLMCETVRYERH
EANEVLYYPDDIGTCWYILLSGSVFIKESMFLPRSSFGKRSAGSLSRRGCECIVLEPSEM
IVVDYMDENEEYFQRQASHRQSRRRFRKINPKGERQTIIDTVDPYPVGKPPLPRGYHTEC
TKPQLPADFTKLHITDSLHPQVMHVSSSHSGCSITSDSGSSSLSDIYQATESEAGEMDLS
GLPETAVDSEEDDDEEDIERASDPLMSRDIVRDCLEKDPMDRTDDDIEQLLEFMHQLPAF
ANMTMSVRRELCAVMVFAVVERAGTIVLNDGEELDSWSVILNGSVEVTYHDGHTEILCMG
NSFGVSPTMEKEFMKGVMRTKVDDCQFVCIAQQEYCCILNQVEKNMQKVEEEGEIVMVKE
HRELDRTGTRKGHIVIKGTTERLTMHLVEEHSVVDPTFIEDFLLTYRIFLSSPMIVGKKL
LEWFNDPSLRDKVTRVVLLWVNNHFNDFEGDPAMTHFLEEFENNLEREKMCGHLRLLNIA
CAAKAKRRLVTLTKPSREAPLPFTLLGGSEKRFGIFIDSVETGSKAAEAGIKRGDQVXSF
NFSFSSARKCSSALKDLVKTPCALKLAYIGDLMTRPILPDCTCCCQGLDQFLVLNAAGTG
LPRITSEISVIDLVPSLTEKETPEASIVQSVTTLLVIVTVFKELLARPAEEKKNGAPHLP
KIGDIKKTSRYSIPDLAVDVEQVIGLEKANKKAKANTVGGRNKLKKILDKTRISILPQKP
YNDIGLGHSQDDSIVGLRQSKHIPTTLPVSGTLSSSNPDLLQSHHRILDFNNPPDLPDQV
LRVFKADQQSRYIIISKDTTAMEVVVQAIREFALTAAPEAYSLCEVSVTPEGVIKQRRLP
DQLSKLADRIQLSGRYYLKNNMETETLCSDEDAQDLLRESQISVLQLSTVEVATQLSMRN
FELFRNIEPTEYMDDLFKLKSKTGSANLKKFEEVINQETFWVATEIVREQNQLKRMKIIK
HFIKIALHCRECKNFNSMFAIISGLNLAPVSRLRGTWEKLPSKYEKLFQDLQDLFDPSRN
MAKYRNVLNSQNLQPPIIPLFPVIKKDLTFLHEGNDSKVDGLVNFEKLRMIAKEIRHVGR
MASVNMDPALMFRTRKKKWRSLGSLSQGTTNSAVLDVVQTGGHKKRVRRSSFLNAKKLYE
DAQMARKVKQYLSNLILDTNEENLQTISLQCEPSTNTLPKCGDKKGGKPDTSPVVPRAVS
QQKQQQHQQKGNQALQVPAVSLYPSRKKVPVKDLPPFGTSSPQALKKILALSEEVGDRHK
KQPEDTISNASSPPTSPQSSPRKGGSQLRSHGSRQSDLTGSSFFPGSENSNRNNNALRTY
GIGYTLAPSGTVDNFSDSGHSEISSRSSIVSNSSFDLMPGPMHDDKRQRHSVSVVDSSLG
VGKMERRATIDPDQYSLGSYALMQEGRNLYPGATVLSSPSSEELTQDQGDRASLDAADSG
RGSWTSCSSGSHDNIQTIQHQRSWETLAFGHPHFDNLAEGAGLWASGCQMDQMMYSDPSS
KLSRNSQDHGQGRGSWASSTGYWGEDSEGDTGTIKRRGGKDVNADAETSSITTYSEDTEI
HSRPGHITVPSGTAKSLIARKEGRYREPPPTPPGYTALTISDFPEGQAHPGRKPPDYNVA
LQRSRMVTRPSDSQQTHSHPGTRPGSRPQWHKPNEADPRLSRFQSQGFSAEEEDDDEQVS
AV
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atgagaatggcttcctacgtggacaacagtttcagacaggcggtgatgaaaaacccggcc
gaacggacgcaacaggatttggaaatagtgtattcgtacctacatggaatggaagcattg
tctaacctaagagaacatcagctaaggttaatgtgtgaaactgtaagatatgaaagacac
gaagcaaacgaagtgctatactacccggatgacattggtacctgttggtatatcctactg
tctggttcagtattcatcaaagaatccatgtttttgccaagaagcagttttggcaagcgc
tctgcaggaagccttagtagacgcggttgtgaatgcattgtgttggagccttctgaaatg
attgtggtggactatatggatgaaaatgaggaatattttcagcggcaagcatctcacagg
cagtctcgcaggagatttcggaaaattaacccgaaaggagagagacaaacaattattgac
acagtggatccataccctgttgggaagccgccgttacctagaggataccacacggaatgc
actaaacctcagctccctgcagatttcaccaagctccacatcactgacagcctccatccg
caggtgatgcacgtgtcctccagtcattcaggatgtagcattacaagcgactctgggagt
agcagtctatccgatatttaccaggccacagagagcgaggccggggagatggatctgagt
gggctgcccgaaacagcagtggactctgaggaggatgacgatgaggaggatattgaacgt
gcttcagaccctctgatgagtcgggatattgtccgtgactgccttgagaaggaccccatg
gaccggactgacgatgacattgaacaattactggaattcatgcatcagctgcctgcattt
gccaacatgacaatgtccgtgcggagagagctgtgtgcggtgatggtgtttgcagtggta
gagcgagccggaacaatagtgctcaatgacggggaagagctggactcgtggtcagtgatt
ttgaatgggtctgtggaagtgacgtaccacgatgggcatacagagatcctgtgtatgggg
aacagctttggggtttcccctacaatggagaaagagttcatgaaaggagtgatgagaacc
aaagtggatgattgccagtttgtttgcatagcccagcaggaatactgctgcattctcaat
caggtagagaagaacatgcagaaggtagaggaggagggagagattgtgatggtgaaggag
caccgggagcttgatcgcactgggaccaggaaaggacacattgtcatcaaggggacaaca
gaaaggctgacaatgcatctggttgaggagcactctgtggtggatcccacattcattgaa
gactttctcctgacatacaggatctttctctccagcccaatgattgtaggcaagaagctg
ctggagtggtttaatgaccctagcctcagggacaaggttacacgggtagtgttgctgtgg
gtaaacaatcacttcaatgactttgaaggagaccccgccatgactcactttcttgaagaa
tttgaaaacaatttagaaagagagaaaatgtgtggacatctaagactgttaaatattgcc
tgtgctgctaaagccaaacgaagactagtaaccctaactaaaccttccagggaggcccct
ttgcccttcacccttttgggagggtcagagaaacggtttggaatcttcatagatagtgta
gaaactgggagcaaagctgctgaagctggaataaaacgtggtgaccaggtannttctttt
aacttttcattcagttctgctagaaaatgcagttcagctctaaaggacctggttaaaaca
ccctgtgctctaaaattggcatacattggagacctgatgacaagaccaatattaccagat
tgcacctgctgctgtcaaggcctggatcaatttttagttttaaatgcagcaggcacaggg
ctgccaagaataacctctgagatcagcgtgatagatttggtgccatctctcactgaaaaa
gaaaccccagaagccagcattgtgcagtctgtgacaactttgttggttattgttacagta
tttaaagagcttttagcaaggccagctgaggaaaagaagaatggtgctccccatctaccc
aagattggtgatattaaaaaaacaagtcgctactcaatcccggacctggctgtggatgtt
gagcaggtgatcggcctcgaaaaagccaacaagaaggctaaggccaacactgtaggagga
aggaacaagctgaagaaaatacttgacaagactcgcatcagcattctaccccagaaacca
tacaatgacattggccttggccactctcaggatgacagcatcgtggggctaaggcagtca
aagcacatccccactacattgcctgtgagtgggaccttatcttccagcaaccctgatctg
ttacagtctcatcaccgcattctggatttcaacaatcctccagatttaccagaccaggtc
ctgcgggttttcaaggcagaccagcagagccgctatatcataatcagcaaagacacaact
gccatggaagtcgtggtccaagctatccgggagtttgcactgaccgcagcccccgaggcc
tactctctatgtgaagtctcagtcaccccagaaggtgtcatcaagcaaaggcggcttccg
gatcagctctccaaactggcagacagaatacagctaagtggaaggtattacctgaagaac
aacatggagacggagactctgtgctcagacgaggatgcccaggacctgctgcgggagagc
cagatttcggtgctgcagctcagcacagtggaagtggccacacagctctccatgaggaac
tttgagctgttccgcaacatcgagcccaccgagtacatggacgaccttttcaagctcaag
tccaagaccggctcggcgaacctcaagaagttcgaggaggtcatcaaccaggaaacgttc
tgggtggccacggagatcgtgagggaacaaaaccagctcaagaggatgaagatcatcaag
cacttcatcaagatcgccctgcactgcagagagtgcaagaacttcaactccatgtttgca
atcatcagtggattaaacttggctccagtatcaaggttgcgtggtacctgggagaagctt
cctagtaaatatgagaagctgtttcaagacctgcaggatctctttgacccctccaggaac
atggcaaaatatcgcaatgtcctcaacagccagaatctgcagcctcccattattcctctc
tttcctgtcataaaaaaggatctcacattcctgcatgaaggcaatgactccaaagtggat
ggtttggtgaattttgagaagctaagaatgatagcaaaagagatacgtcatgttggccga
atggcttctgttaacatggatcctgctctgatgttcaggacgaggaagaagaaatggagg
agtcttggatctctcagccagggaaccaccaactctgccgtgttggatgtggtccagacc
ggagggcacaaaaaacgtgtgcgtcgaagctctttcctcaatgcgaagaagctgtacgag
gatgcccagatggcccgcaaggtcaagcaatacctgtcaaacctgattctggatacaaat
gaagaaaaccttcagaccatctccttgcagtgtgagccttccaccaacacattgcctaag
tgtggagacaaaaagggtgggaagccagacacatctcctgtagttcccagagctgtaagt
cagcagaaacagcagcagcatcaacagaaaggaaatcaggcacttcaggtccctgctgtt
tcactctatccttctcgcaagaaagtaccggtcaaggatctaccaccatttggtaccagt
tcacctcaagccttgaagaaaatcctggccttgtcagaagaagtaggtgaccgacataaa
aagcaaccagaggacaccatatcaaatgcttcttcccctcccacatcccctcaaagctca
cctaggaagggtggcagtcagctgagatctcacggctccaggcagtcagacctaaccggc
tcctcctttttcccgggaagtgagaacagtaacaggaataacaatgcactgcggacctat
gggataggttatacgttggcgccaagtggaactgtggacaatttttcagattcaggtcat
agtgaaatttcatcccgttccagtattgttagtaactcttcctttgacttgatgccgggt
cccatgcatgacgacaagagacagaggcactctgtcagtgttgtggattccagcctgggt
gtggggaaaatggaaagaagagccactatagatcctgatcaatacagccttggttcatat
gcattgatgcaagagggacggaatctgtatcctggtgctacagtcctctcttccccgagt
tcagaagaacttacccaggaccagggggaccgagcctcgcttgatgcagcagacagcggt
cgaggaagctggacttcatgttcaagtggatcacatgacaatatacaaaccatacaacac
cagaggagctgggaaacgctggcttttgggcatcctcattttgacaacttggcagaaggg
gctggactttgggcctcaggctgtcaaatggaccagatgatgtactcagaccccagctct
aagctgagccgaaacagccaggatcacggacaaggcagagggagctgggcatcctccacc
ggctactggggggaagactctgagggggacactggaacaataaagaggaggggtgggaaa
gatgttaacgctgatgctgaaacaagcagcattacaacttacagtgaagacacagaaata
cacagtagacctggtcatataactgtgccatctggcacagcaaaaagtcttattgcacgg
aaggaaggcaggtatcgtgaacctccaccgacaccgccaggctatactgcattgacaatt
tcagactttccagaaggccaggcacacccaggaaggaagcctcccgattacaatgtagca
ctacagcggtcacggatggtgacacgccccagtgactctcaacaaacgcacagtcaccca
ggcaccaggccagggagccgaccacaatggcacaaaccaaacgaagcagacccacggcta
tctcgcttccagtcccaagggttctcggctgaggaggaggatgatgatgaacaggtttct
gcagtctga
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integrated database retrieval system
