Polyodon spathula (Mississippi paddlefish): 121326548
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Entry
121326548 CDS
T07273
Name
(RefSeq) replication factor C subunit 4-like
KO
K10755
replication factor C subunit 2/4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03030
DNA replication
pspa03410
Base excision repair
pspa03420
Nucleotide excision repair
pspa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121326548
03410 Base excision repair
121326548
03420 Nucleotide excision repair
121326548
03430 Mismatch repair
121326548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pspa03032
]
121326548
03036 Chromosome and associated proteins [BR:
pspa03036
]
121326548
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121326548
DNA replication proteins [BR:
pspa03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121326548
DNA Replication Termination Factors
ELG1-RFC complex
121326548
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
121326548
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121326548
Check point factors
HRAD17(Rad24)-RFC complex
121326548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
AAA_assoc_2
AAA_22
AAA_11
AAA_16
AAA_24
DUF815
Gp44_lid
AAA_30
Mg_chelatase
AAA_19
RuvB_N
SLFN-g3_helicase
AAA_28
AAA_5
AAA_7
Motif
Other DBs
NCBI-GeneID:
121326548
NCBI-ProteinID:
XP_041125818
LinkDB
All DBs
Position
14:30576130..30584683
Genome browser
AA seq
359 aa
AA seq
DB search
MQAFLKGTSTSTKPQKDKATAGASGENRKQKPVPWVEKYRPKCVDEVAFQEEVVAVLKRS
LEGADLPNLLFYGPPGTGKTSTILAASRELYGPELFRQRVLELNASDERGIQVVRNKIKT
FAQLTVAGSRSDGKPCPPFKIIILDEADSMTNPAQAALRRTMEKESKTTRFCLICNYVSR
IIEPLTSRCSKFRFKPLADEIQEKRVLEICEKEDVKYTKEGITALVKVSEGDLRKAITYL
QSAARLTGGKEITEQVITEIAGVVSNEMIDSLIQACYSSSFEKLEVVVSNMINEGFAASQ
IINQLHDTVIEKEDLNDKQKSAVTEKLAEVDKCLMDGADEYLQMISLCSVIMQQVTQNN
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcgtttttaaagggaacaagcaccagcaccaaaccccagaaagacaaagccact
gctggagcgagtggagaaaacaggaagcaaaaaccagtcccatgggttgaaaaatatcga
ccaaaatgtgttgatgaagtggctttccaggaagaggtagttgcagtactgaagcggtca
ctagagggagctgatcttcccaatctcctgttctatggccctccagggactgggaagacc
tccacaattttagctgcatccagagagctgtacggaccggaactgtttcgacagagggtc
ctcgagttaaatgcttcagacgaacgtggcatccaggtggtgcgaaacaaaataaaaacg
tttgcacagttaacagttgctgggagccgttcagatggtaaaccgtgccctccgtttaaa
atcatcatcctggacgaagctgactccatgaccaatcctgcccaggctgctctcagacgc
accatggagaaggagtctaaaacaacacgcttctgtctcatctgtaactacgtgagcagg
ataatagagcctttaacatctcgatgctccaagttccgctttaaacctttagcagatgaa
atacaggagaaaagagtactggagatttgtgaaaaggaagatgtgaaatacacgaaagag
ggaattacagccctggttaaagtgtctgaaggggacctccgaaaggctatcacttaccta
caaagtgcagcccgactcactgggggcaaggaaataactgagcaagttattactgaaata
gcgggggttgtttccaatgagatgattgacagcctcatacaagcatgctacagcagctca
tttgaaaaacttgaagtcgttgtcagtaacatgataaatgaggggtttgctgcttcacaa
attatcaaccagctccacgacactgtaattgagaaagaggacctgaatgacaagcagaag
tcggcagtcacggaaaaattggcggaagtagataaatgcttgatggatggagcagatgag
tacttgcagatgattagtctttgttctgtaattatgcagcaggttacccagaacaactga
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integrated database retrieval system
