Polyodon spathula (Mississippi paddlefish): 121329526
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Entry
121329526 CDS
T07273
Name
(RefSeq) caprin-1-like isoform X1
KO
K18743
caprin-1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121329526
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
121329526
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Caprin-1_C
Caprin-1_dimer
Motif
Other DBs
NCBI-GeneID:
121329526
NCBI-ProteinID:
XP_041131060
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All DBs
Position
17:8547337..8572611
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AA seq
709 aa
AA seq
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MPSATISSSMAQAASPEVGSVPGSLPVSAQFQSGAQSETIKQVLGVIEKKVRNLEKKKGK
LDDYQAKVNGGECLNQDQLEAVSKFQEVVNNLDFARELQKGFLALGQDIQKAVKKAARRE
QLQREEAEQRRLKAVLELQFMLDKLGEETVRNELKQGLNGTPLLTDDDLTALDEFYKLVG
PERDQNLRLSEQYNQATLHYWDLLEAKDKAVAGTTYKALKGTLDKVLQSGYFDSAHAHQN
GVCEEEEQQLAVAETPEAEEQHAEPESEVSEEYTEPSEVEQTEFVNRQFMSDAAYGSSDK
EQGDEWSTDSEVVSAIRQQSPVQSAPPVVAAAEPHALNPVTPTASADPVVRKLRVQDLMA
QMQGPYNFMQDSMLEYESQAMDPAIVSAQPMKTAQSIDMPQMVCPPVHAESRLSQPNTVP
VQPEVTQVPMVSPVPEAFSTSQPLYQTSLTTDPHPQTEAMDPIQASMSLASEQPAASSAL
PAASQPQVFQAVSSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPAIEAEALKQPSQYPSS
YSQGFSSQTAHQVEQPELQQEQLQSVVGSFHTQDQTIPATGGHQQLSQQPQQGSGFPRPG
QSFYNSRAMSRGGPRNSRGMLNGYRGPSNGFRGGYDNYRPPFSNTPNSGYGQSQFNAPRD
YSNSSYQRDGYQQNYKRGAGQGPRGCSRGRGGSLRPTRGIPHMTAQQAN
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgccctcagcgactatcagcagcagcatggctcaggcggccagtccagaggtggggtcc
gttcctggctcgctgcccgtgtcagcccagttccagtccggtgcccagtcggagacaatc
aagcaggtgctgggtgtcattgaaaagaaagtccgaaacctggaaaagaagaaggggaag
cttgatgactaccaggcaaaggtgaacggtggagaatgtctcaatcaagaccagttggag
gcagtatccaagttccaggaagtggtgaataatttggactttgctcgggaactgcagaag
ggcttcctggctttaggccaagatatccagaaggctgtgaagaaggcagcacgtcgagag
cagctgcagcgggaggaggcagagcagcggcgtctcaaggctgtgctggagctgcagttc
atgctggacaagctgggtgaggagaccgtgcgcaacgaactcaagcagggtctgaatggc
acccccctactgacagacgatgacctaacagccctcgacgagttctacaaactggtggga
cctgagcgtgaccaaaatcttaggttgagtgagcagtacaaccaggcaaccctgcactac
tgggacctgctggaggcaaaggacaaggctgtagcaggaacaacatacaaggcactgaag
gggactcttgataaggttctccagagtggctacttcgacagtgcccacgcgcaccaaaat
ggagtgtgtgaggaggaagagcaacagctggcagttgcggagacccctgaggcggaggag
cagcatgcagagccagaaagtgaagtttctgaagaatacaccgaacccagtgaagtggaa
caaacagaatttgtgaacagacagttcatgtcagacgctgcttacggcagcagtgacaaa
gaacaaggagatgagtggagcacagattcagaggttgttagtgctattcggcagcagtcc
cctgtgcaatcagcccctcctgttgtcgctgctgcagagccccacgcactgaacccagtg
acacctacagcctctgcagacccagttgtcagaaaactgagggtacaggacctcatggca
caaatgcagggcccctacaacttcatgcaagattcaatgctggagtatgagagtcaggcc
atggacccagcaattgtttctgcacagcccatgaagaccgcacagagcattgatatgcca
caaatggtctgtcctccagttcatgctgaatccagactgtcacaacccaacacagtacct
gtacagccagaagtcacacaggtccctatggtctccccagtgcctgaagctttctctaca
tctcaacccttgtaccagacttccctcacgacggacccccacccacagacagaagccatg
gaccccattcaagcttcaatgtccttggcctccgagcagcccgcagcttcttcagcactt
cctgctgcgtcccagccccaggtatttcaggctgtgtccagcaaacccctccacagcagc
gggataaacgtcaacgccgctcctttccagtccatgcagacggtgtttaatatgaatgca
cctgttcctcctgccattgaggcagaagcactgaaacagccaagccaatacccaagcagt
tacagccagggcttcagcagccagactgcacaccaggtggagcagccagagctacagcag
gagcagctgcaatctgtggtcggcagtttccatacacaagaccaaaccatcccagccaca
ggtggccatcagcagctatcccaacagcctcagcagggtagcggcttcccgcgtcccggc
cagtccttctacaacagtcgggccatgtcccggggcggaccccgcaactctcgtggcatg
ctcaatggctaccggggaccttcaaatggcttcagaggtggatatgacaactaccgtcct
cctttctccaacactccgaacagtggctatgggcaatcccagtttaacgcacctcgtgac
tactccaacagcagctaccaacgggatggataccaacagaactacaagcggggagctggc
cagggtcctcgaggttgctctcgaggtcgtggaggttcgttgagacccacccgaggaatt
ccacacatgacagctcagcaagcaaattaa
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