Paraburkholderia sprentiae: BJG93_03555
Help
Entry
BJG93_03555 CDS
T04610
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pspw
Paraburkholderia sprentiae
Pathway
pspw03030
DNA replication
pspw03410
Base excision repair
pspw03420
Nucleotide excision repair
pspw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pspw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BJG93_03555 (ligA)
03410 Base excision repair
BJG93_03555 (ligA)
03420 Nucleotide excision repair
BJG93_03555 (ligA)
03430 Mismatch repair
BJG93_03555 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pspw03032
]
BJG93_03555 (ligA)
03400 DNA repair and recombination proteins [BR:
pspw03400
]
BJG93_03555 (ligA)
Enzymes [BR:
pspw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BJG93_03555 (ligA)
DNA replication proteins [BR:
pspw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BJG93_03555 (ligA)
DNA repair and recombination proteins [BR:
pspw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BJG93_03555 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BJG93_03555 (ligA)
MMR (mismatch excision repair)
DNA ligase
BJG93_03555 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BJG93_03555 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
MctB
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
APA84570
UniProt:
A0A1I9YE37
LinkDB
All DBs
Position
1:complement(2032006..2034069)
Genome browser
AA seq
687 aa
AA seq
DB search
MARSSVPLSATNAPAERAAWLRAELERANYAYYVLDQPDLPDAEYDKLFKELERIEAEHP
DLIVPDSPTQRVGGEAASGFEPVVHDLPMLSLNNGFADEDIVAFDKRIGDALGNNASESP
VPVDYAAELKFDGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLRLKGKRVP
RVLDVRGEVLMFKRDFERLNERQRAAGQREFANPRNAAAGSLRQLDSKITAQRPLSFFAY
GIGVLEGIEMPATHSELLDWYKEMGLPVNGERAVVRGAEGLLGFFHAVGEKRDKLPYDID
GVVYKVNRRDEQDALGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEP
VFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSALVDRRPADVREFVMP
TQCPVCGSSIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGDKIIDQLVEQ
NLVRTPADLFNLGFATLAELDRFADKSAQNLLDSLEKAKHTSLARFIYALGIRHVGESTA
KDLAKHFGSLDPIMDASPEQLLEVNDVGPVVAESIHQFFAEDHNRTVIEQLRAPGKVTWP
EGPPAPKAAQGVLAGQTVVLTGTLPNLSREDAKEMLEAAGAKVAGSVSKKTSYVVAGADA
GSKLAKAEELGIPVLDEDGMRKLLEGH
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggcccgatcctccgtccctctttccgcaaccaacgctcccgctgagcgggccgcgtgg
ttgcgcgcggaactcgaacgcgcgaactacgcgtactacgtgctcgatcaaccggacctg
ccggacgccgagtacgacaagctgttcaaggagttggagcgcatcgaggccgagcatccg
gatctgatcgtgcctgactcgccgacgcagcgcgtcggcggcgaagccgcgagcggtttc
gagccggtcgtgcatgatctcccgatgctgtcgctcaacaacggtttcgccgacgaagac
atcgtcgcgttcgacaagcgcatcggcgacgcgctcggcaacaatgcgagcgagtcgccg
gtaccggtcgattatgcggctgagctgaaattcgacggcctcgcgatctcactgcgctac
gtcgacggcgtgttcgtgcaggcgtccacgcgcggcgacggcacgactggcgagaacgtc
accgaaaacgtccgcacgatccgctcgattccgctgaggctcaagggcaagcgcgtgcca
cgcgtgctcgacgtgcgcggcgaagtgctgatgttcaagcgcgatttcgagcgcctgaac
gaacgccagcgcgccgccgggcaacgcgaattcgcgaacccgcgcaacgcggcggcgggc
agcttgcgccagctcgattcgaagatcaccgcgcagcggccgctgtcgttttttgcgtat
ggcatcggcgtgctggaaggcatcgagatgccggccacgcatagcgaactgctcgactgg
tacaaggagatgggcttgccggtcaatggcgagcgcgcggtcgtgcgaggcgccgaaggc
ctgctcggctttttccacgcggtcggcgagaagcgcgacaagctgccgtacgacatcgac
ggggtggtctataaggtcaaccggcgcgacgagcaggatgcgctcggcttcgtgtcgcgt
gcgccgcgcttcgcgctcgcgcacaaattccccgcccaggaagcgctgaccaggctcgtc
gcgatcgacgtgcaggtcggccgcaccggcgcgatcacgccggtcgcgcggctcgaaccg
gtgttcgtcggcggcgcgacggtcacgaacgcgaccttgcacaacgaggacgaagtgcgc
cgcaaggacatccggattggcgatacggtgatcgtgcggcgcgcgggcgacgtgattccg
gaagtggtcagcgcactagtcgaccgtcgtccggccgacgtgcgcgagttcgtgatgccg
acgcagtgcccggtatgcggctcgtcgatcgagcgcttgcccgacgaggcgatcgcgcgc
tgcacgggcggactcttctgtccggcgcagcgcaagcaggcgttgtggcacttcgcgcag
cgtcgcgcgctcgatatcgacggcctcggcgataagatcatcgatcaactggtcgaacag
aatctggttcgcacgccggccgacctgttcaatcttggcttcgcgacgctcgcggaactc
gaccgctttgccgacaagtccgcgcagaacctgctcgactcgctcgaaaaagccaagcac
acgtcgctcgcgcgcttcatctacgcgttggggattcgccacgtcggcgagtcgaccgcg
aaggatctcgccaagcacttcggctcgctcgatccgatcatggatgcgtcgccggaacag
ctgctcgaagtcaacgacgtgggtccggtcgtcgccgaatcgatccatcagtttttcgcc
gaggaccacaaccgcacggtgatcgagcaactgcgcgcgccgggcaaggtcacgtggccc
gaggggccgcccgcgccgaaggcggcgcagggcgtgctggccggccagacggtcgtgctg
accggcacgctgccgaacctgtcgcgcgaggatgcaaaggaaatgctggaggcggccggc
gcgaaggtggccgggtcggtatcgaagaaaaccagttacgtggtggcgggcgcggacgcg
ggcagcaaactcgcgaaagccgaggaactcggcatccccgtactcgacgaagatggtatg
cgcaagctcctggaggggcactga
DBGET
integrated database retrieval system
