Punctularia strigosozonata: PUNSTDRAFT_114556
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Entry
PUNSTDRAFT_114556 CDS
T03131
Name
(RefSeq) Clp1-domain-containing protein
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
psq
Punctularia strigosozonata
Pathway
psq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PUNSTDRAFT_114556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psq03019
]
PUNSTDRAFT_114556
Enzymes [BR:
psq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
PUNSTDRAFT_114556
Messenger RNA biogenesis [BR:
psq03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
PUNSTDRAFT_114556
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_N
CLP1_P
Clp1
nSTAND3
AAA
AAA_16
Motif
Other DBs
NCBI-GeneID:
18876652
NCBI-ProteinID:
XP_007385349
JGI:
114556
LinkDB
All DBs
Position
Unknown
AA seq
498 aa
AA seq
DB search
MAGDTKSWSLEPETEYRFELDPGTSLAIKLLTGHAEIFGNELVEGKSYVFGFECKAAVFT
WRGCTIEMSYLTSNTNAHVTGRPSTEYVSEETPMSTYANLHFAFEQMRVRALAALHGSPI
SDEEDAPPSLDPPRVLVLGPENSGKTSLCKILANYCLRSIEGWTPILVNTNTSEGGWGVP
GTVSAVPLHSPLPTASPANPLGMVATSAPMHLSSNALLPLTYWYGHANMKRNPLLLDRII
RNLGENINDRWDLDPEGRVAGIIVDTPSSFAASKSGPGQDHRLTLIKACVDAFRINVIVV
VGHEKLNVEMQRTFGDRVNVVKVPKSGGVVELDQAYRDRIQAYQLHAYMYGQKITPPPGV
TAPSQGGETIGDFTLSPSSTVISFGDLQIYRIGEENMAPSSALPIGAARVVSELQPILVD
PAMPGSGLLNSVLALLAPPNPDESERYDEEILDLHVVGFLVVTALDIGNKKMTVLSPSPG
SLIGKTAIMGSFEWTEAV
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcgacaccaaaagctggtccttagaacccgaaaccgaatacagattcgaactc
gatcctggaaccagcctggccatcaagctcctcactgggcatgctgagatctttggaaac
gaactggtggaggggaaatcgtacgtgttcggcttcgaatgcaaagctgccgtgtttaca
tggagaggatgcacgatcgagatgagttatctaacttccaacacgaacgcccacgttact
ggtcgaccgtccacggagtatgtgtctgaggaaacaccaatgtcaacatacgccaatctt
cacttcgcattcgagcaaatgcgagttcgagcgctggcggcgttgcatggatctcctata
tcggatgaagaggatgctccaccgagtctcgaccctcctcgtgttttggtgctagggcca
gagaactccgggaaaactagcctgtgcaagattcttgctaattactgtcttcgctctatc
gagggatggactcctatactcgtgaacaccaacacaagcgaaggcggatggggcgtacca
gggacagtgtctgctgttcccctccacagccctttacctactgcttcgccagccaacccc
ctgggaatggttgctacatcagctcctatgcacctatcctcaaacgcgctgcttcctctg
acgtactggtatggccatgcgaatatgaagcgcaaccctctgctcctggaccgcatcatc
cgaaatctgggcgaaaatatcaatgatcggtgggacctcgatcccgaagggagagttgca
gggataatcgtcgatactccctcgtcgttcgctgctagtaaatcggggccaggtcaagat
caccgcttgaccctgattaaagcttgtgtagacgccttccgaatcaatgtcattgttgtc
gtagggcacgaaaagctcaatgtcgaaatgcagaggacgtttggcgatcgggtgaacgtt
gtcaaagttccaaaatccggcggtgtcgtggaacttgaccaagcatatcgagaccgaatt
caagcttatcagctacacgcgtatatgtacggtcagaaaattacgcccccgccgggggtg
acagcaccctcgcaaggtggagagactatcggagatttcactctttcgccttcgtctaca
gtgatcagcttcggcgatctacagatataccgcattggcgaagaaaacatggcaccatct
tcggcactgccaatcggagcagcacgcgtggtatctgagcttcagcccattctcgttgat
cctgctatgccaggctccgggctattgaattccgtgctcgcgctgttggcacccccgaac
cctgacgagtccgagcgatacgatgaggaaatactcgatttgcacgttgtgggttttcta
gtagtaaccgcgctcgatattgggaacaagaagatgacggtgctgtcgccaagtccaggg
tctctcataggcaagaccgctattatgggttcgttcgaatggacagaagccgtatag
DBGET
integrated database retrieval system
