Punctularia strigosozonata: PUNSTDRAFT_144231
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Entry
PUNSTDRAFT_144231 CDS
T03131
Name
(RefSeq) CCR4-Not complex component
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
psq
Punctularia strigosozonata
Pathway
psq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PUNSTDRAFT_144231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psq03019
]
PUNSTDRAFT_144231
Messenger RNA biogenesis [BR:
psq03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PUNSTDRAFT_144231
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PUNSTDRAFT_144231
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
ARM_Cnot1
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
18881242
NCBI-ProteinID:
XP_007384758
JGI:
144231
LinkDB
All DBs
Position
Unknown
AA seq
2114 aa
AA seq
DB search
MDNPPPTRDTNIHTIVKAQIVFLLSTLTEENFERNQAEIRSLSEQHGVDTYLHFIRRLIV
HSQARLSSSAASSAFDPSTALTFRLLIQETQRLARDPFLADRFRDGIDKGEGDVFRHFDL
ARFVDRVGLRPLERLVLAASIVAAPTRKDLATQAQNIIRLEWENAVLSLCQHPSFDHADL
NPSQLAKLLTNLLSDPPADAPVLDALQRQELLRAARTKYGDEIIEPILQRILPNLSLAPG
TDLVDTFIDLGPENTGDVQSMRALLFRFGITDANPPTDSQLLEVVQALARFAVEGVGVGD
VSALVAAFGSFHTKLDWPAVIRSFDWPDRHSVDTATLKLLIAILLNSPEDAEPHAVTGFW
DIWDNALAQLRLLDALLSLPGDTFNFVTLPGRRIVTVDDVSVASPTIKSLAANVQGHTWN
SLDLFEVLVRFSEIGTPEIVSCVHEMLDKAVKISAELVHMGLLQVERPDWSGIRREYGDK
LLHMFLNGHPNHQLVFMRIWQIRPTYLTDAFRDFYNESEVNITRILDVAQDLKILDSLLD
VQPFTFALDVAALASRREYLNLDKWLQDNINTHGKEFLMAILDFLQAKMESEKAARTSEV
AVDSQRTMPLNPQTITIFLRTLRNSSSMMEKKDVDYCLEVRNSCLQVHPRLMNLTPGSEV
EPGFTVVSYSPEIEAEVDSIYKQMYDESITIDEVIVMLQRFKNSTNPRENEIFSCMLHFL
FDEYKFFQAYYPARELAMTGYLFGSLIQYELVDYIPLGIAIRCVMDALKCPPQTNLFKFG
LEALARFEGRLAEWRPLCELLLEIPNLLQQRPELGPIIHRALANSSDKSSNPAALTVVNG
HAPDIQPPFTAIQPDSIPGDIEPPSEESSDKMLFIVNNLAPSNFESKIDEMREQFKDDYS
RWFANYLVDQRVSTEPNNHQLYLRFLDAIGSKTLFRFILHETFVKSAALLNSDKTMQSSS
ERAILKNVGSWLGTITLARDQPIKHKNLAYKELLLEAFDNTRLIVAIPFVCKSLEPCASS
KVFRPPNPWLMAVIGLLAELYHFAELKLNLKFEIEVLCKALNINLDTVEATSLIRNRPLL
SEPALDYVPDIDSLPMGGYDPSNQLHADPHVLGLGPPAASDSGRAVGSHIEGILSSLLSL
VTISPQLAPLHTNIAFKRAIQLGVDRAVREIILPVVERSVTIAGISTRELVVKDFATDTN
VDRLQKSAHMMAQKLAGSLALVTCKEPLRSNLATHMRQSLAEHGFGEIISEQIIMLLVQD
NLEFACQAIEQAAKDRAVDEIDDALMPSYEGRRRHNQQRPNQPYWDVQAPPQNIYPVPLP
DPLRIKASGVQPVQLRVYEDFGNDPKRLMTSRPGSTVSYTRNEPPTYSATPPPDQPVANS
NAFSHAEAMQRFLIIVKELDAILEQLPVDSLTALPANHEVRQLVRQVLFLTTESAEPSHT
ALALSQKIVQCLYRTQSQLGREIYVALLQQLCDMFRDVRQEALPWLAEAEDDRKFNVPVT
VLLFKSGLLKVSQQDVHLAKLLANPRPILQTYVAGLIRECVTANPPVASHHQFVTCVPRL
IEIYREGTANEDVISLVDDLRGVRRPASRMAQDPVTRIPSAKLETDELRSQMQAHFQRWV
GIYQRSPKLDVHFEYFVRELEKTRVLSTDDVSLLFFRVCGEASISHYVRSVATGQFDYAF
QAVDAFARLVTMLVRFQGDKTGMGFDQAKVYYLKKILSTVTLILAHLHEEQGMAFQQKPF
FRFFSSLVNDFHAIKSSLGSVYFRFLTTISETFSSLQPRYFPGFAFSWTCLVSHRHFMPN
LLMSEHREGWSSFHELLLSLFKFLAPFLKNADLQPAMKDLYRGTLRLLLVLLHDFPEFLS
EYYFTLCDAIPPRCVQMRNIILSAYPAGLILPDPNLRDLKLDAIPEMGPIPAVLSDFAAG
LRDPELRSQLDQYLVNRGTPLFLPSLKSRLHVADGTEGSPEGYDLSFINSLVMYIGMSSV
AQAKVRSGATLFVPTDPGVVALQYLATNLDMEGQYHLLSSMVLHLRYPNAHTQWFSSLVL
HLFLEIQEGRFGEVVTRVLLERFVVHRPHPWGAMVTFIELMRNPKYEFASKEFVRIASEV
TLLLESVARTVFQA
NT seq
6345 nt
NT seq
+upstream
nt +downstream
nt
atggacaaccccccgccgacgcgtgacacgaacatacacaccatcgtcaaggcgcagatc
gtgttcctgttgtcgacgctcacggaggagaattttgaacggaatcaggccgagatacgc
tcgctgtccgaacaacacggtgtcgacacgtacctccacttcatccgccgcctcatagtc
cactcgcaagctcgcctctcctcttccgccgcctcctctgccttcgacccgtccactgcc
ctcaccttccgcctcttgattcaagaaacacagcgactcgcccgggaccccttcctagcc
gaccgttttcgtgatggaatcgataaaggcgaaggcgacgtcttccggcactttgatctc
gctcgctttgtggaccgcgtcggtctgcgcccgctcgagcggctggtgctcgcggcatcc
atagtcgcggcgccgacgcgtaaggacctcgcgacgcaggcgcagaacatcatccggctg
gagtgggagaacgcggtgctctcgttatgccagcatccatccttcgaccatgccgacctt
aacccgagccagctcgcgaagttgctgacgaacctgctctccgaccctcctgcggacgca
ccggtgttggacgcgcttcaaaggcaggaactcctgcgggccgcgaggacgaagtacggc
gacgagatcatcgagccgatcctgcagaggattcttccgaacttaagtttggcgccgggt
accgatctcgtggacaccttcatcgaccttgggccggaaaatacgggagacgtgcagagc
atgcgggcactgctcttccgatttggcatcacggacgccaacccgcctaccgacagtcag
ctcttggaggtggttcaagctctggctcggtttgcggtggagggcgtgggcgtgggcgac
gtgagcgctctcgtcgcagcgtttggtagctttcacacaaagctagactggcctgccgtc
atcaggtcgttcgactggcctgatcggcatagcgtggacaccgcgacgctcaagttgtta
atcgcgatactcctgaactctcccgaagatgccgaacctcacgcagttactggattttgg
gacatctgggacaacgcccttgctcaactgcgtttgcttgacgcactgctatcactcccc
ggcgacaccttcaacttcgtgacgcttcctggccggaggattgttacggtcgacgacgtc
tccgtggcgagccctactattaagtcactcgccgcaaacgttcagggtcacacctggaac
tcgctagacctcttcgaggtcctggtcaggttctcggagattggcacaccggagattgtc
agctgcgtacatgaaatgctcgacaaagccgtcaaaatcagtgcagagctggttcacatg
ggccttttacaggttgagcggccagattggagtggcatccgtcgagagtatggggacaag
cttcttcacatgtttctaaatgggcatcccaaccatcagcttgtgttcatgcgtatatgg
caaatacgtccaacatacctcacagacgctttccgtgacttctacaacgagagcgaagtg
aatatcacgcggatcctagatgtagcccaggatctcaagattctggactcgttgctggat
gtgcaaccgttcacttttgcacttgacgtcgctgcgcttgcgtctcgccgcgagtacctc
aacctggataagtggttgcaggacaacatcaatactcacggaaaggagttcctcatggca
atcctggacttcttgcaggctaagatggagagcgagaaggctgcgcggacgtctgaggtg
gccgtcgactcccagcgcactatgcccttaaatccgcaaaccattaccatcttcctacgt
acattgcgcaacagctcgagcatgatggagaagaaggacgttgactactgcctggaagtt
cgcaactcgtgcttgcaagtgcacccgcggctcatgaatctgactccgggttcggaagtc
gagcctgggttcactgtcgttagctactctccggagatcgaagcggaagtggatagcatc
tacaagcagatgtacgacgagtcgattaccatcgacgaggtcatcgtcatgctgcagcgc
ttcaagaactccacgaacccgcgggagaatgagatattctcctgcatgcttcatttcctc
ttcgacgagtacaagttctttcaagcttactacccggcacgtgagctggccatgaccggc
tacctcttcggctcgttgatccagtacgagctcgtcgactacatacccctcgggattgcc
atccgatgcgttatggacgctctcaagtgtccgcctcagaccaatctcttcaagttcggc
ttggaggcccttgcgagattcgagggccggcttgccgaatggcgtcctctctgcgaactt
ctcctcgaaatacccaacctcctccagcaacgacctgaactcggacccatcatccatcga
gcactcgcgaacagttctgataaatcatccaatcccgccgcactgacggtcgtcaacggc
cacgcccccgatatacaaccccctttcaccgccatacagccagactcaatcccaggagac
atcgagcccccgtctgaggaatcgtccgacaagatgctattcatcgtcaacaatcttgct
ccgagtaacttcgagagcaagatagacgagatgcgtgaacagttcaaagacgattactca
aggtggttcgccaactatctcgtcgatcaacgtgtcagcacagaaccgaacaaccatcaa
ctctacctccgctttctcgatgccatcggcagcaagacacttttccggttcatcttgcac
gagaccttcgtcaaatcggccgccttactcaattccgataagacgatgcagtcaagctca
gagcgagccattctcaagaatgtcggctcctggcttgggacaatcaccctggctcgcgat
caaccaatcaagcacaaaaaccttgcctacaaggaattgctcctcgaggcatttgataat
acccgattgatcgtggccatacccttcgtctgcaagtctctagagccatgcgcgtcctct
aaggtgttcaggccgcccaacccgtggctaatggccgtcatcgggcttttggctgaactg
taccatttcgcagagcttaagctcaatctcaagttcgaaatcgaggtgctctgcaaggcg
ctcaacatcaatctcgacactgtggaggccacgagtctgattcgcaatcgcccactattg
tccgaaccggcgttggattatgttccggacatcgactcgcttcctatgggcggttacgat
ccgtccaaccagctgcatgccgaccctcatgtcctaggtcttggtcctccagctgcctca
gactcagggcgggccgtcggttctcatatcgagggaatcttgtcaagtctgctctcgctt
gtcacgatcagtccgcagctcgcccctttgcatacaaacatagcattcaagagagcgatc
caattgggtgtcgatcgggcagttcgtgagatcattctgcctgttgtcgagcgctcagtc
actatagccggcatctctactagggagttggtcgtcaaggactttgccacggacaccaat
gtggatcgactgcaaaagtctgcccacatgatggcccagaagctagccggaagcctggcg
ttggtgacgtgtaaagaaccgctcagaagcaatcttgctacccacatgcggcagtctttg
gctgaacatggctttggcgaaatcatatcagaacagatcatcatgcttttagtgcaagac
aatctagaattcgcctgccaagccatcgaacaagccgcgaaggaccgggctgtggatgaa
atcgacgacgctctcatgccatcctacgagggacgcagacgacacaatcagcaacggccc
aaccagccatactgggacgttcaagcaccacctcagaatatatatcccgtgccgctgccg
gatcctctcagaattaaagccagtggagttcaacctgtgcagttacgagtttatgaagat
ttcggcaatgaccccaagcgtttaatgacgagccgacctggctctacagtatcctatacc
aggaacgaaccgcctacttattctgccacgccgcccccagaccaacccgtggctaactct
aatgcattctcccatgctgaagcaatgcagcgtttcctcatcattgtgaaggaattggat
gctatcctcgagcagctgccagtcgactcgctgactgctcttccggccaatcacgaagtc
cgacagttagtccgacaggttctcttcctcacgaccgagtcggcggagccaagtcacact
gcgcttgcgctgtctcagaagatagtacaatgcctctaccgaacgcagtcgcaacttgga
agggagatctacgtggcgttattacagcaactgtgcgatatgttccgggacgtcagacag
gaagccttgccctggttggccgaggcggaagacgatcggaagttcaacgtgcctgtcact
gtgctcttgttcaagagcggcttgctcaaggtttctcagcaagatgttcatctagcgaaa
cttctggcaaaccctcgaccaatcctgcaaacctatgtcgctggcttgatccgcgaatgc
gtcaccgctaatcctcctgttgcttcacatcatcaatttgttacctgcgtcccccgcctg
attgaaatctaccgcgaaggcacggcgaatgaggatgtcatatcccttgtggacgacctt
cgtggcgtgcgtcgcccggcttcaagaatggcccaagaccccgtgacgcgcattccgtcc
gccaaattggagaccgacgaactacgcagtcagatgcaagctcacttccagcgatgggtc
ggtatctaccaacgctctcccaagctcgacgtccacttcgaatacttcgttcgggagctt
gagaagacgcgcgtcctcagcacggatgacgtgtctctgctcttcttcagggtctgtggc
gaggcgagtatcagtcactatgtaaggagtgtggctaccggtcaattcgactacgcgttc
caagccgtcgatgcttttgccagactggtgacgatgctcgtccgtttccaaggggacaag
acaggcatgggctttgaccaggcgaaggtctactatctgaagaaaattctctctactgtc
accctcatcttggcccacctgcatgaggagcagggaatggcgttccagcagaaacctttc
ttccgtttcttctcgagcctcgtcaatgacttccacgcgataaaatcgagcttgggctct
gtttacttccgcttcctcacgacgatcagcgagacgttcagctcattgcagccccgctac
ttcccaggtttcgcattctcttggacgtgcctcgtctctcaccgccacttcatgcccaac
ctactgatgtcggagcatcgtgagggatggtcgagcttccacgaactgctgctatccctc
ttcaagttcttggcaccattccttaagaatgccgaccttcagcctgcgatgaaagatcta
taccgtggcacacttcgcctcctcctcgtcctcctgcatgacttccccgagttcctcagc
gagtactacttcaccctctgcgatgccataccccctcgctgcgttcagatgcgcaacatc
atattgagtgcctatcccgccggcctcatattgccggatcccaaccttcgcgacctcaag
ttggacgctatcccggaaatgggccccatacccgccgtgctatccgacttcgcggccggc
ttacgggaccccgaactgcgcagtcagctagaccagtatctggtaaaccgcgggacccca
ttgttcctcccatcgctcaagagtcgtctccatgtcgctgatggcactgagggatctccg
gagggatacgacttatcattcattaactccctcgtgatgtatatcgggatgtcatccgtc
gcacaagcaaaagtacgaagcggcgcgaccctgttcgttccgaccgaccccggtgtcgtc
gcgctgcagtacttggcaacgaatctcgatatggaaggccaatatcacctgctctcttcg
atggtgctgcatctccgttaccctaacgcgcacactcaatggttcagctccctggtgctt
catcttttcctcgagatccaggagggccgcttcggtgaagtcgtgacgagggtgctgctg
gaacgcttcgttgtccatcgccctcatccgtggggagccatggtcaccttcattgagctg
atgcgcaacccaaagtacgaatttgccagcaaggagttcgttcgcatcgcgtcggaggtg
accctattgctggagagtgtcgcacgcacggttttccaggcttga
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integrated database retrieval system
