Pelodiscus sinensis (Chinese soft-shelled turtle): 102449063
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Entry
102449063 CDS
T02980
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102449063 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pss03019
]
102449063 (CNOT1)
Messenger RNA biogenesis [BR:
pss03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102449063 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102449063 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
102449063
NCBI-ProteinID:
XP_006128137
Ensembl:
ENSPSIG00000005499
LinkDB
All DBs
Position
Unknown
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMARS
HSGLTEGIPLQSISAPGSGIWSDGKDKSDGTQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQLRDSKGLQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLVPEKDQPKSAQLPPETLATMLACLQACAG
NVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SLGGPTVPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTAFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATNTTCTASVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLMMSIATNLKNSFATALRAASPQQREMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELE
QHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVTMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLPNKVLGIVVGV
LIQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cccgaggcagacaggcatttgctacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagactcaatttctgatccaagagtgtgcgtcg
ctgattacaaagccaaattttatctcgacgctgtcctacgccattgacaatccattgcac
tatcagaagagtctaaagccttcaccccatttatttgcccagctgagtaaagttataaaa
ttaagcaaagttcaagaggtgatttttggtcttgctttactgaattccttcagctctgat
ctacgaggttttgctgcccagtttatcaaacagaaacttccagatcttctgcgctcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaagtc
ctgcacctcctactctcccatctcctttttgggcagaagggagcctttggggttggacag
gaacagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgcccc
gtggtgcttgcaccacttctataccctgaaaaacgggacatcctaatggacaggatcctg
cctgattctggagggatagccaaaacaatgatggagagctctctggcagacttcatgcaa
gaagttggctacggcttttgtacaagtgttgaagaatgtcgcaacataatcatgcagttt
ggcgttcgggaggtcacagctgcccaggttgccagggttttgggaatgatggctcgaagt
cattcggggttgacggagggtattccattacaatctatttcggctcctggcagtgggata
tggagtgatgggaaagacaaaagtgatggaacgcaagcccatacctggaacgtggaggtc
ttgattgatgttcttaaagagctgaatcctagtttgaacttcaaggaagtaacttatgaa
ctggaccaccctgggtttcaacttcgtgacagcaagggtctgcagattgtggtatatggg
attcagagaggtctaggcatggaagtcttcccagttgatctcatttacaggccttggaaa
catgctgagggccagctctccttcatccagcattccctcataaacccagagatcttctgt
tttgctgactatccctgtcatactgttgccacagacatcctgaaagctccaccagaggat
gacaatcgagaaattgccacatggaagagtctggatttgattgaatctctgttgcggttg
gcagaagtgggccagtatgagcaagtgaagcagctcttcagtttccctatcaagcactgc
ccagatatgttggtattggccttattgcagataaacacttcctggcatactttgcggcat
gaactcatctctacgcttatgccaatttttcttggcaaccaccccaactcggccattatt
ttgcactatgcatggcatggacagggtcagtctccttcaattcgccaacttatcatgcat
gcaatggctgaatggtacatgagaggggagcagtacgaccaggcaaaactgtcacgtatt
cttgatgtggcgcaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatccaggcctgcatgaccttctta
aagagacgatgcccatctatattgggtggccttgtgccagagaaagaccagcccaaaagt
gctcagcttcctccagaaaccctggcaactatgttggcctgcctacaagcttgtgctggg
aatgtttctcaggaattgtcagagaccatcctcactatggtagccaattgcagtaatgtc
atgaacaaagctagacagccaccacctggagtcatgccaaagggacgcccaccaagtgct
agcagcttggatgccatctctcctgtacagattgacccacttgctgggatggcatctctt
agtttaggtggtccaactgttccacatactcagagtatgcaaggcttccctccaaatttg
ggttcagcttttagtacacctcaatcaccagcaaaagcatttcctcccctttccacccaa
aatcagacaacagctttcagtgggattggcggactctcttcacaacttccagtaggtggt
cttactacgggtagcctaactggtatagggactggggccctgggcctccctgcagtgaac
aacgatcccttcgtgcaaaggaaactgagtacatctggactgaaccaacctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggcaaatcagcacttt
agtaaagaaatagatgatgaggcaaatagctactttcaacgcatttataaccatccaccc
caccccaccatgtctgtggatgaggtgttagaaatgctacagaggtttaaggactccaac
attaagcgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaggaataccgt
tttttcccccagtacccagacaaagagctgcatataacagcctgcctgtttggtgggata
atagagaaaggactggttacttacatggcattgggcctggccctgcgctatgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttccctcatcacctacaggagtacattgaatatggacagcaatcaagagac
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaggttccagcaaaagcgccacttgctggccaagtcagcactatagta
accacctccaccaccaccaccgtggcaaaaaccattacaatcactcggccaactggagtc
agcttcaagaaggatgtgccgccttccattaatactaccaacattgataccttactagtg
gcaactgatcaaactgagagaatagtggaacccccagaaaatgttcaggaaaaaattgct
ttcatattcaataatctgtctcaatcaaatatgacccagaaggttgaggagctgaaggaa
acagtgaaagaagaattcatgccttgggtttcacagtatcttgtgatgaaaagagtcagt
attgagccaaattttcacagcctatattcaaacttccttgacactcttaagaatccagag
tttaacaagatggttctgaatgaaacctacagaaatattaaggtgctcctgacgtcagat
aaagcagcagccaatttctctgatcggtcccttctgaagaaccttggccactggttggga
atgatcacgctggctaaaaataaacccatcttgcacacggatttggatgtgaaatcctta
cttctggaggcttatgttaaggggcaacaggagttgctttatgtggtgccatttgttgcc
aaagttttagaatctagcgtcagaagtgtggttttcaggcctccaaacccgtggacaatg
gcaatcatgaatgttttagctgagttgcatcaagaacatgacttaaaactaaatctgaaa
tttgagattgaggtgctctgcaagaaccttgcactagacatcaatgagctgaaacctgga
aacctcctgaaagacaaagatcgactgaaaaatttggatgagcagctctctgctccgaag
aaggatgtaaaacagccagaggagctaccaccaatcacaacaaccactgcttctacaacc
ccagctaccaacaccacttgtacagcatccgttcctccacaacctcagtacagttatcat
gacatcaacgtctattctctaggagggctggctccacacattactctaaatccgactatt
cccctgttccaggcccatccgcagctaaagcagtgcgtgcgtcaagctatcgaacgtgca
gtgcaagaacttgtccatccagtggtagatcggtccattaagattgccatgaccacctgt
gaacaaatagtcaggaaggactttgcactggattcagaggaatcacgcatgcgtgtagca
gcacaccacatgatgcggaacctgactgctggcatggccatgattacctgcagggaacct
ctgatgatgagcatcgctaccaacttgaagaacagttttgctactgccctgcgggcagct
tccccacagcagagggagatgatggagcaggcagctgcacagttagctcaggataactgt
gagttagcatgctgcttcattcagaagacagctgtggaaaaggcaggccctgaaatggac
aagaggctggcaactgaatttgagctcagaaaacatgctaggcaagagggccgtcggtac
tgtgatcctgtggtattaacttaccaagctgaacggatgccagagcagatcagattgaag
gttggtggcgtggacccaaaacagctggctgtttatgaagagtttgcgcgcaatgtcccc
ggcttcttgcctaccaatgacctaacccagcccacaggattcttggctcagcctatgaag
caagcttgggccacagatgatgtagcccagatctatgataaatgtatgacagaactggaa
caacacctgcaatccataccacacaccctggccatgaacccacaagctcaagccttacgc
agtctgttggaggctgtagtagtggctcgtaactcccgtgatgctatagctgcgcttgga
ctgctccaaaaggctgttgagggcttactggatgccaccagtggtgcagatgctgacctc
ctgctccgctacagagagtgtcacttacttgtactgaaagctctgcaggatggccgtgcg
tatgggtctccatggtgtaacaagcagattaccagatgcttgattgaatgtcgggatgag
tacaagtacaacgtagaagcggtggaattgctaatccgcaatcaccttgttactatgcag
caatacgatcttcacttggcacagtccatggagaatggcttgaactacatggcagtggca
tttgccatgcaattggtgaagatcttgttggtggatgagaggagtgtagcccatgtaaca
gaagcagatctgttccacaccattgagactctgatgaggattaatgctcactccagaggg
aatgccccggaaggattaccccagttgatggaagtggttcgatccaattatgaagcaatg
attgaccgtgcacatggaggccctaacttcatgatgcattctgggatctcccaagcctcc
gagtatgatgatccaccaggcctcagggagaaggcagagtatctactgagggaatgggtg
aatctctaccattcagctgcagctggccgtgacagtaccaaagctttctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcaccagcaaggaatcctgaaaacagatgac
ctgataactcggttctttcgtctttgcactgaaatgtgtgttgaaatcagctatcgtgct
caggctgagcagcaacacaatcctgccgccaatcccaccatgatcagagccaagtgctat
cacaacctggatgcctttgtgcggcttattgcactgctagtgaagcactctggggaggcc
accaacactgtcacaaagatcaacctgccgaacaaggttcttggtatagtggtgggagtt
cttatccaggaccatgatgttcggcagagtgagtttcagcagcttccttaccaccgcatt
ttcatcatgttgctgttagaattaaatgctccggaacatgtgctggagaccatcaacttc
cagacccttacagccttttgcaacacgtttcatatcctgaggcctacaaaagctccaggc
tttgtttatgcgtggttggaactgatctcccatcggatatttattgcgagaatgctggca
catacaccacagcagaagggttggcctatgtatgctcagctgcttattgatctcttcaag
tatttggctcctttccttagaaatgtggaactcactaaacctatgcaaatcctctacaag
ggcactctgcgtgtgctgttggtcttactgcatgactttccagaattcctgtgtgactac
cactatgggttctgtgatgtgatcccaccaaactgtatccaactaaggaatctgatcctg
agtgccttcccacgtaacatgaggcttccagatcctttcactcccaacctaaaggtggac
atgctaagtgagattaatattgcaccacggatactcaccaacttcactggagtgatgcca
cctcagttcaagaaagatttggattcctatctcaaaactcgctctcctgtcactttcctg
tctgacttgcgtagcaatctccaggtatcaaatgaacccggcaaccgctacaacatccag
ctgattaatgcactggtgctatatgtaggcactcaggctattgcacatattcacaacaaa
ggcagcacaccctcgatgagcacgattacccattccgctcacatggacatcttccagaac
ttggctgtggacttggacacagaaggtcggtacctcttcttgaatgcaattgccaatcag
ctgcggtacccaaacagccatacacactatttcagttgtaccatgctttacctgtttgca
gaggccaatactgaggctatacaggaacagatcactagggtacttctggagcgattgatt
gtaaacaggcctcacccatggggtctcctaattactttcattgagctgataaaaaatcca
gcatttaagttctggaatcatgagtttgttcactgtgctccagaaatcgagaagttgttt
cagtcagtcgcacagtgctgcatggggcagaagcaggcacagcaagtgatggaagggact
ggtgccagttag
DBGET
integrated database retrieval system
