Pelodiscus sinensis (Chinese soft-shelled turtle): 102454765
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Entry
102454765 CDS
T02980
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102454765 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pss03041
]
102454765 (SNRNP200)
Enzymes [BR:
pss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102454765 (SNRNP200)
Spliceosome [BR:
pss03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
102454765 (SNRNP200)
Complex C
U5 SnRNP specific factors
102454765 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Terminase_6N
Motif
Other DBs
NCBI-GeneID:
102454765
NCBI-ProteinID:
XP_006113850
Ensembl:
ENSPSIG00000008580
LinkDB
All DBs
Position
Unknown
AA seq
2127 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVRDEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKRDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMESDPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFAQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLVSVDKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINIDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGINVAELTGDHQLCKEEINATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLESLVARAIRNIEMTQEDVRLVGLSATLPNYED
VATFLRVDPVKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPSLYGLSHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNETVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDITVRGGVRRAKHLLTFFVPVFEPLPPQYFIR
VVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFN
PIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQV
FLDWYEKFQERLGKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNVS
LFLVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSAT
STFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAIMKHSPKKPVIVFVPSRKQT
RLTAIDILTTCASDVQRQRFLHCTEKDLGPYLDKLRDGTLKETLVSGVAYLHEGLTAMER
RVVEQLFSSGAVQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVG
HANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQ
DAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVEQTLSDLEQSKCISIEDEMD
VAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLR
QLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDV
LSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEME
DEDRNVLLQLSDAQIADVARFCNRYPNIELSYEVVEKEGIRSGGPVVVLVQLEREEEVTG
PVIAPLFPQKREEGWWVVIGDSKSNSLISIKRLTLQQKAKVKLDFVAPAPGAHNYTLYFM
SDAYMGCDQEYKFSVDVKEAESDSDSD
NT seq
6384 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgtgaccgcgcggagcctgcagtacgaatacaaggcgaattctaatcttgta
ctgcaagctgatcgctccttgatcgacaggaccaggcgagatgagcctacaggggaagtg
ctctccttggttgggaagctggagggcactcgaatgggggacaaggctcaaagaacaaaa
ccccagatgcaggaagagagacgagcaaagaggagaaagcgtgatgaggacagacatgat
atcaataaaatgaagggttatacattgctctctgagggcattgatgagatggtgggaatc
atctacaaacccaaaaccaaggagacccgggagacctatgaggtgctgctaagtttcatt
caggcagcccttggggaccagcctcgtgacattctctgtggagcagctgacgaggtcttg
gctgtattgaagaatgagaagctgcgagacaaagagaggcggaaggaaattgatttactc
ttaggacagactgatgatacccgctatcacgtgctggtgaacttgggcaagaagatcaca
gactatggtggtgacaaggagatccagaacatggatgataacattgatgagacatatggc
gtgaatgttcagtttgagtctgatgaagaggaaggtgatgaggatgtgtatggtgaagta
cgggatgaagcatctgatgatgacatggagggagatgaggctgttgtccgctgcaccctt
tcagccaatcttgtggcatcaggtgaactgatgagctcaaagaagagagacttgcatccc
cgagacattgatgccttttggcttcagcgacagctgagtcgcttctatgatgatgccatc
gtgtcccagaagaaagcagatgaggtgctagagatcttaaagactgccagtgatgacagg
gagtgtgaaaaccagcttgtcctgcttctgggcttcaacacctttgacttcattaaagtg
ctgaggcagcaccgaatgatgatcctgtactgcacactgttggctagtgcacagagtgaa
gctgagaaggagaggataatggggaagatggagtctgatcctgagctgtcgaaattcctg
tatcagctgcatgagactgagaaggaggatctgattcgggaggaacgctcccgcagggaa
cgtgtgcgccagtcccggatggacactgacctggaaaccatggatctggatcagggtgga
gaggctctggccccgcgccaggtgttggacctggaggatctggtgtttgctcaagggagc
cacttcatggctaacaagcggtgccagttgcccgatggctcattccgcaggcagcgcaaa
ggctatgaggaggtgcatgtgcctgctttgaagccaaagccctttggctctgaggagcaa
ctggtgtctgtggacaaactgcccaaatacgcccaggctgggtttgaggggttcaaaaca
ctgaaccggattcagagcaaactctaccgtgctgcgcttgagaccgatgagaacctgcta
ctctgtgctcccacgggtgcagggaagaccaatgtcgctctgatgtgcatgctacgtgag
attgggaagcacatcaacattgatggaaccatcaacgtggatgacttcaaaatcatctac
attgctccgatgaggtccctggtgcaggagatggtgggcagctttgggaagcgcctggca
acttacggcatcaatgtggctgagctgactggagaccaccagttgtgtaaggaagaaatc
aatgctacccagatcatcgtctgcacccctgagaagtgggacattatcacccgcaaggga
ggggagcgtacctatactcagctggtgcgcctcattatcctggatgagatccaccttcta
catgacgaccggggtcctgttctagagtctctggtggccagagccatccgcaacattgag
atgacccaggaggacgtgagacttgttggcctcagtgccactctcccaaactacgaggat
gtggctacgttcctgagagtggaccctgtcaaaggcttattctactttgataacagcttt
cgcccagtgcctctggagcagacctatgtgggaatcacggagaagaaagccatcaagcgc
ttccagatcatgaatgagattgtctacgagaagattatggagcatgctgggaagaaccag
gtgctggtgttcgttcactccaggaaggaaacggggaagactgcccgagccatcagggac
atgtgtctggagaaagacacactgggtctcttccttcgggagggctcagcctctacagag
gtcctgaggacagaagctgagcagtgcaagaatcttgagctgaaggacctgttgccatat
ggctttgctattcaccatgctgggatgactagggtagatcgaacgctggtggaagatctg
tttgctgacaagcacattcaggttctggtctccacagcaacgctggcctggggtgttaac
cttccggctcacacagtcattatcaaagggacgcaggtgtacagtccagagaagggccgc
tggactgagctgggtgctttggacatcctgcagatgctcggacgtgctgggagaccccag
tacgacacaaagggggaggggatcctcatcacatcccatggagagctgcagtattacctc
tccctactcaaccagcagcttcctattgagagtcagatggtgtcgaaactgccagacatg
ctgaatgcggagattgttctggggaatgtccagaatgcaaaggatgcggtgaactggctg
ggctatgcctacctgtacatccgaatgctgcgctccccgtcactctatgggctgtctcat
gacgacctaaagggagacccgttgctggaccagcgccggctggatttggttcacactgca
gcactgatgctagacaagaacaatcttgtgaagtatgacaagaagacggggaacttccag
gtgacagagctgggccgcattgccagccactactacatcaccaacgagactgtgcaaacc
tacaaccagcttctgaagcccaccctgagtgaaattgagcttttccgtgtcttctcgctc
tcttcagaattcaagaacatcactgtgcgggaggaagagaagctggagctccagaagctg
ctggagcgggtccccattcctgtgaaggagagcatcgaggagcccagtgccaagatcaat
gtgctcctgcaggcctttatctcccagctgaagctggaagggtttgctctgatggcagac
atggtgtatgtcacccagtctgccggccggctgatgcgtgcgatctttgagattgtcctg
aaccggggctgggcacagctcaccgacaagactctgaacctctgcaagatgattgacaag
cggatgtggcagtctatgtgtcccctgcgccagttcaggaaactgcctgaggaggtggtg
aagaaaatcgagaagaagaacttcccctttgaacgtctctatgacctgaaccacaatgaa
ataggagagctcattcggatgcccaagatgggcaagacaatccacaagtatgttcatctg
ttcccaaagctggagctgtctgtccatctccagcccatcaccaggtccaccctgaaagtg
gagctgaccatcaccccggactttcagtgggatgagaaggtgcacggctcatctgaagcc
ttctggatcctggtggaggatgtggacattacagtaaggggtggggtcagaagagccaag
cacctcctcaccttcttcgtgccagtgttcgagcccctgcccccacagtacttcatccgg
gtggtatctgaccgctggctctcctgtgagacgcagctgcccgtgtccttcaggcacctg
attctgcccgagaaataccccccgcccactgagctgctggatctgcagccactgcctgtg
tccgctctgcgcaacagtgcctttgagagcctctaccaggacaagttccccttcttcaat
cccatccagacccaagtgtttaacactgtctacaacagtgatgacaatgtgttcgtgggc
gcccccacgggaagtggaaagaccatctgtgcggaatttgccatcctgaggatgctgctg
cagaactcggaggggcgctgtgtttatatcaccccaatggaggcccttgctgagcaggtc
ttcctcgactggtacgagaagtttcaggagcgcctcgggaagaaagtggtcttactgacc
ggggagaccagcaccgatctcaagttgttgggcaagggcaacatcatcatcagtaccccc
gagaagtgggacatcctctctcggcgctggaagcagcgcaagaatgtccagaacgtcagc
ctcttcctcgtggatgaagtgcatctcattgggggcgagaacgggcctgtgctggaggtg
atctgctcccggatgcgctacatctcctcccagatcgagcggcccatccgcatcgtggcc
ctgagctcttcgctgtccaacgccaaggacgttgcccactggctgggctgcagtgccaca
tcgaccttcaacttccaccccaatgtgcgccctgtgcccctagagctgcacattcagggc
ttcaacatcagccacacgcagacccgcctgctgtccatggccaagccggtctatcatgcc
atcatgaagcactcgcccaaaaagcccgtcattgtctttgtcccgtcacgcaagcagaca
cgcctcacagccatagacatcctcaccacctgtgcctccgatgtccagcggcagaggttt
ctgcactgcacagagaaagacttggggccgtacctggacaagctccgtgatggcaccctc
aaggagaccctggtcagtggggtggcctatctgcatgaggggctgacagccatggagcgg
cgcgttgtggagcagctcttcagctctggtgctgtccaggtagtggtggcttcgcggagc
ctgtgctggggcatgaatgtagctgctcacctagtgatcatcatggacactcagtactac
aatggcaagattcatgcgtatgtggattaccccatctatgatgtgctgcagatggtgggc
catgccaatcgccctttgcaggatgacgaagggcgctgcgttattatgtgccagggatcc
aagaaggatttcttcaagaaattcctttatgagccgctgccagtggagtcgcacctggat
cactgcatgcatgaccatttcaatgctgagattgtgaccaaaaccattgagaacaagcaa
gatgctgtggactacctcacctggaccttcctgtaccgcaggatgacccagaacccaaac
tattacaacctgcaaggggtgtctcacagacacctgtctgaccacctgtctgagctggtg
gagcagaccctcagtgacctggagcagtccaagtgtatcagcatcgaggatgagatggac
gtggccccccttaacctgggaatgattgcagcctattactacattaactacaccacgatt
gagctcttcagcatgtctctgaatgccaagacgaaggtgcgtgggctgattgagatcatc
tccaacgctgctgagtatgagaacatccccatcaggcaccacgaggacaacctcctgcgg
cagttggctcagaaagtccctcataaactgaataaccccaagttcaacgacccccacgtc
aagaccaacctgctgctgcaggctcacctgtcccgcatgcagctgagtgcggagttgcag
tctgacacggaggagatactcagcaaggcaatccgcctgatccaggcctgtgtggacgtc
ctgtccagcaacggctggctcagcccggccctggcagccatggagctggcccagatggtc
acccaggccatgtggtcgaaggactcgtacctgaagcagctgcctcacttcacttcggag
cacatcaagcgctgcacagacaagggggtggagagcgtgtttgacatcatggagatggag
gacgaggaccggaatgtgctgctgcagctctcagatgcccagatcgccgacgtggcccgt
ttctgcaaccgctaccctaacatcgagctctcctatgaggtggtggagaaggagggcatt
cgcagtggaggcccggtggtggtgctggtgcagctggagcgagaggaggaggtcacagga
cctgtcattgcacctctcttcccacagaaacgggaggagggctggtgggtagtgatcggc
gactccaaatccaacagcctcatctccatcaagaggctgactctgcaacagaaggccaag
gtgaagctggattttgtggccccagccccgggtgcccacaactacaccctctacttcatg
agtgatgcctacatgggctgcgaccaggagtataaattcagcgtggatgtgaaggaagca
gagagtgacagtgactccgactaa
DBGET
integrated database retrieval system
