Pseudomonas sp. SXM-1: DCC84_30625
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Entry
DCC84_30625 CDS
T11095
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pssx Pseudomonas sp. SXM-1
Pathway
pssx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pssx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DCC84_30625 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pssx03021
]
DCC84_30625 (rpoB)
03400 DNA repair and recombination proteins [BR:
pssx03400
]
DCC84_30625 (rpoB)
Enzymes [BR:
pssx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DCC84_30625 (rpoB)
Transcription machinery [BR:
pssx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DCC84_30625 (rpoB)
DNA repair and recombination proteins [BR:
pssx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DCC84_30625 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
QBQ13841
LinkDB
All DBs
Position
complement(6478831..6482904)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHLSGET
LSLELVPQRLRGEIAVLDIQDDKGKVIVEAGRRITARHINQIEKAGIKTLEVPLDYVLGR
TTAKVIVHPATGEILAECNTELNTEILAKIAKSQVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASATMNDKKMLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGYNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMIEEQRKVADLRKFLHEIYNEIGGRNEELDTFSDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtcccgtaccttctggctatccagctggattcgtatcgtgaattcttgcag
gcgggagcgaccaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcctgggc
gaaccggcatttgatgtcaaagaatgcgtgttgcgcggtgttacgtacgccgtacctttg
cgggtaaaagtccgtctgatcatcttcgacaaagagtcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttc
gttatcaacggtaccgagcgcgttatcgtttcccagctgcaccgttccccgggcgtgttc
ttcgaccacgaccgcggcaagacgcacagctccggcaagctcctgtactccgcgcggatc
attccgtaccgcggttcgtggttggacttcgagttcgacccgaaagactgcgtgttcgtg
cgtatcgaccgtcgtcgcaagctgccggcctcggtactgctgcgcgcgctcggctatacc
actgagcaagtgctggacgctttctacaccactaacgtattccacctgagcggcgaaacc
ctcagcctggaactggtgcctcagcgcctgcgtggtgagattgccgttctggacatccag
gacgacaaaggcaaggtcatcgttgaagccggccgccgtattaccgcgcgccacatcaac
cagatcgaaaaagccggtatcaagacgctggaagtgcctctggactacgtcctgggtcgc
accaccgccaaggtcatcgtgcacccggccaccggcgaaatcctggctgaatgcaacacc
gagctgaacaccgagatcctggcgaaaatcgccaagtcccaggttgttcgcatcgagacc
ctgtacaccaacgacatcgactgcggcccgttcgtctccgacaccctgaagatcgactcc
accagcaaccaattggaagcgctggtcgagatctatcgcatgatgcgtcctggcgagcca
ccaaccaaagacgctgccgagaccctgttcaacaacctgttcttcagccctgagcgctat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgctgtgcaaggaagacatcgtcgcggtactgaagaccctggtcgacatc
cgtaacggcaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgc
gtaggcgaaatggccgagaaccagttccgcgttggcctggtacgtgttgagcgtgcggtc
aaagagcgtctgtcgatggccgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggctgcggcggtgaaagagttcttcggttccagccagctctcgcagttcatg
gaccagaacaacccgctctctgagatcacccacaagcgccgtgtttccgcactgggcccg
ggcggtctgactcgtgagcgtgcaggctttgaagttcgtgacgtacacccgactcactac
ggtcgtgtatgcccgattgaaacgccggaaggtccgaacatcggcctgatcaactccctg
gctgcctatgcgcgcaccaaccagtacggcttcctcgagagcccgtaccgcgtggtgaaa
gacgcactggtcaccgacgagatcgtgttcctgtccgccatcgaagaagctgatcacgtg
atcgctcaggcttcggccacgatgaacgacaagaaaatgctgatcgacgagctggtagcg
gttcgtcacttgaacgagttcaccgtcaaggcgccggaagacgtcaccttgatggacgta
tcgccgaagcaggtagtttcggttgcagcgtcgctgatcccgttcctggaacacgatgac
gccaaccgtgcgttgatgggttccaacatgcagcgtcaagctgtaccgaccctgcgcgcc
gacaagccgctggtaggtaccggcatggagcgtaacgtagcccgtgactccggcgtttgc
gtcgtggctcgtcgtggcggcgtgatcgactccgttgatgccagccgtatcgtggttcgt
gttgccgatgacgaagttgaaactggcgaagccggtgtcgacatctacaacctgaccaaa
tacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtcagcaagggtgat
cgggttcagcgcagcgacatcatggcagacggtccgtccaccgatatgggtgagctggca
ctgggtcagaacatgcgcatcgcgttcatggcctggaacggttacaacttcgaagactcc
atctgcctgtccgagcgtgtggttcaggaagatcgctttaccacgatccacattcaggaa
ctgacctgtgtggcgcgtgacaccaagcttgggccagaggaaatcactgcagacatcccg
aacgtgggtgaagctgcactgaacaagctggacgaagccggtatcgtttacgtaggtgct
gaagttggcgcaggcgacattctggtaggtaaggtcactccgaaaggcgagacccaactg
actccggaagagaagctgttgcgtgccatcttcggtgaaaaagccagcgacgttaaagac
acttccctgcgtgtacctaccggtaccaagggtactgtcatcgacgtacaggtcttcacc
cgtgacggcgttgagcgtgatgctcgtgcgctgtccatcgagaagacccaactcgacgag
atccgcaaggatctgaacgaagagttccgtatcgttgaaggcgcgaccttcgaacgtctg
cgttccgccctggtaggccacaaggctgaaggcggcgcaggtctgaagaaaggtcaggac
atcaccgacgaagtactcgacggtcttgagcacggccagtggttcaaactgcgcatggct
gaagatgctctgaacgagcagctcgagaaggcccaggcctacatcgtcgatcgtcgccgt
ctgctggacgacaagttcgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgccgcatccagccgggc
gacaagatggccggtcgtcacggtaacaaaggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgatgtcgtcctcaacccgttgggcgta
ccttcgcgtatgaacgttggtcagatccttgaaacccacctgggcctcgcggccaaaggt
ctgggcgagaagatcaaccgtatgatcgaagagcagcgcaaggttgcagacctgcgcaag
ttcctgcacgagatctacaacgagatcggcggtcgcaacgaagagctggacaccttctcc
gaccaggaaatcctggatctggcgaagaacctgcgcggcggcgttccaatggctaccccg
gtgttcgacggtgccaaggaaagcgaaatcaaggccatgctgaaactggcagacctgcca
gaaagcggccagatgcagctgttcgacggccgtaccggcaacaagtttgagcgcccggtt
actgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgct
cgttctaccggttcgtacagcctggttacccagcagccgctgggtggtaaggctcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgctgcttac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggtcggaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtctttcaacgtg
ttgatcaaagaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
