Pedobacter steynii: BFS30_12905
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Entry
BFS30_12905 CDS
T04469
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psty
Pedobacter steynii
Pathway
psty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psty00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BFS30_12905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psty03019
]
BFS30_12905
03009 Ribosome biogenesis [BR:
psty03009
]
BFS30_12905
Enzymes [BR:
psty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BFS30_12905
Messenger RNA biogenesis [BR:
psty03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BFS30_12905
Ribosome biogenesis [BR:
psty03009
]
Prokaryotic type
rRNA helicases
BFS30_12905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
AOM80758
UniProt:
A0A1D7QQ17
LinkDB
All DBs
Position
complement(3081534..3083405)
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AA seq
623 aa
AA seq
DB search
MNPFSKLGISDDVVNAVKDLGFENPTPIQEQSIPVLLEGNNDFVGLAQTGTGKTAAFGLP
LLELIDFKSNKPQALILCPTRELCLQITSDIKNFSKNISGANVVAVYGGANIMQQLREIR
NGVQIVVATPGRMLDIIGRKAIDFTNVKYVVLDEADEMLNMGFQEDINDILSTTPDDKKT
WLFSATMPPEVRRIAKNYMDSPVELTMGTKNTGNVNIEHEYYIVRARDKYAALKRIVDFN
PEIFAVVFCKTKMDTQDVAEHLIKDGYNADALHGDLSQQQRDKVMQRFRDRNMQLLIATD
VAARGIDVNNVTHVVNYSLPDEIESYTHRSGRTGRAGKTGISICIVNSKELGKIRQIERI
IGKQFTKASLPTGFDVCEKQLFALVHKVHKVEVNEAQIEQYIPRIMDEFAELSKEEVIKR
FASLEFNRFLEYYKNAPDLNSSADDRGERGERGERGERSHRGSDGYTRLFINLGSVDDFT
RGDLLSFVCNNGKISGKSIGKIDLKGVYSFFEVEDATVDSLFNNFKGVEFNNRGVRIEKT
ADGDGGGGRSRGGFGGGGRREGGSYGGGRSGGGDRRSSGGGRREGGSGGGRREGGSSSAG
GFRDFSGRSREDRGGSGDRRRRS
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
ataaacccatttagtaaattggggataagtgatgacgttgttaatgccgtaaaggattta
ggtttcgaaaatccaacacctattcaggagcaaagtattcctgtgctgttagagggcaat
aacgattttgttggtttggcccaaacaggaacaggaaagacagccgcattcggtttacct
ctgttagaattgatcgattttaaaagcaacaagcctcaggcattaattttatgccctaca
agagagctttgcttacagattacgagcgacatcaagaatttctcaaaaaacatctctgga
gctaatgtagttgccgtttacggtggcgcaaacattatgcaacaattgcgtgaaattaga
aacggtgtacaaattgttgtggctacaccgggccgtatgttagacattattggcagaaaa
gctatagatttcactaacgtgaagtatgtagttctggatgaagccgatgagatgttgaac
atgggtttccaggaagacattaacgacatcttgtcgactactcctgacgacaaaaaaaca
tggttattctccgctactatgcctccagaggttagaagaatagctaaaaattacatggac
tctccggtagagttaaccatgggtaccaaaaacacaggtaacgtaaatattgagcatgag
tactatatcgtacgtgccagagataaatacgctgctttaaaacgtatcgtagattttaac
cctgaaatctttgcggtagtattctgtaaaaccaaaatggatacacaggatgttgctgag
cacttgattaaagacggttataatgcggatgctttacacggagatttatctcaacaacaa
cgtgataaagtaatgcagcgtttccgtgaccgtaacatgcaattgttaattgctactgat
gttgcagcacgtggtattgatgtaaacaacgtaacacacgttgtgaattattcactacct
gacgaaattgaaagttatacccaccgtagtggtcgtaccggccgtgcgggtaaaacaggt
atctctatctgtatcgttaactctaaagaacttggaaaaatccgtcagattgaaagaatc
attggtaaacaattcactaaagcttctttacctacaggttttgacgtgtgcgaaaaacaa
ttgtttgctttggttcacaaggttcacaaggtagaagttaacgaagcacaaattgagcaa
tacatccctcgtattatggatgagtttgccgaattgagcaaagaagaagtgatcaaacgt
tttgcatctttagagtttaaccgctttttagaatattacaaaaacgctcctgatcttaac
tcttcggctgatgatcgtggtgaaagaggagaacgtggtgagcgcggcgaaagaagccat
agaggcagtgacggctatacccgtttgtttatcaacttaggttcggtagatgactttaca
agaggtgacttgttatcttttgtttgtaacaacggtaaaatcagcggaaaaagcattggc
aaaatcgacttaaaaggtgtttattcattctttgaagtagaagatgcaactgtagattct
cttttcaataacttcaaaggtgttgaattcaacaaccgtggtgttagaattgagaaaact
gctgatggtgacggcggcggtggccgtagtcgtggtggattcggtggcggtggcagacgc
gaaggcggaagttatggcggcggaagaagcggcggtggtgacagaagaagcagcggtggc
ggcagacgcgaaggcggaagtggcggtggcagacgtgaaggcggaagcagcagcgctggt
ggcttcagagatttctctggaagaagccgtgaagatcgtggcggaagcggtgatagaaga
cgtagatcttag
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