Pseudoliparis swirei (Mariana hadal snailfish): 130194140
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Entry
130194140 CDS
T09868
Name
(RefSeq) contactin-associated protein-like 4
KO
K24337
contactin associated protein-like 3/4
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
130194140
Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
Laminin domain-containing proteins
Laminin G domain-containing proteins
130194140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_2
Laminin_G_1
F5_F8_type_C
Laminin_G_3
EGF
F5_F8_type_C_2
EGF_2
hEGF
DUF2812
Motif
Other DBs
NCBI-GeneID:
130194140
NCBI-ProteinID:
XP_056271008
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All DBs
Position
5:5918809..6006742
Genome browser
AA seq
1302 aa
AA seq
DB search
MILNSLFLLCDWSTEVCDSPLVANLPPSSFRSSSQLTNSHGPVFAKVNRREGAGGWSPLV
SDRYQWLEVDLGRRTRITAVATQGRYGSSDWMTAYLLMFSDTGHNWKQHRQEDSFGAFPG
NSNADTVVQYKLKQPVIARYLRLIPLDWNPTGRTGLRLEIYGCRYTSDVASFDGSSSLVF
RRGARPGWTPMETISLKFKTLKNCGTLLHAEGNRGHSLTLELEKGRLLLYHQQGVSSSSG
RQLLVSVGSLLDDQHWHHVKLERLSTHLNLTVDKNTHQVHIPVELSHWEVHQLSLGAVQS
HGLQKAVLSHRNFHGCMENLLYNDLNLIHLAKNNHHHHHHHQASVVGNVTFSCAERVSVS
VTFTDSQSFLQLPGATSRSSGVVSAELQFRTWNKAGLLLTFDLLQQEGTVWLHLSEGRLR
LQINKAGRVQLELSAGSGLSDGQWHHVELKSRPGHLSVTVDKDKGAAAHSSAALPLAADG
RLFFGGCPEESSQECENPFGAFQGCMRLVAVDNQPVDLIKVQQRLLGNYSHLQIDMCGII
DRCSPSHCEHGGRCTQSWSTFHCNCSTGGYRGATCHSPKYEKSCEAYKHKGNASGHYHID
VDGSGPIRPQLIYCNMTEDMAWMVIQHNNTELTRVRSSPERNQESAHFDYKSEEEQLTAI
ISQSEHCEQELSYHCRKSRLLNTPEGSPFAWWVGGPGPGEIQAYWGGALPGSRQCACGLR
DDCLDSNHYCNCDADYDQWADDSGLLTQKESLPIRSLVLGDLQRAGSEAAYRVGPLRCHG
DKNFWNAAFFDKETSYLHFPTFHGELNADIAFLFKTKSSSGVFLENLGIKDFIRIELGSA
SQVVFSLDVGNGPLEVRVETSVQLNDNRWHSVRAERNVKEASLRVDEFPAATQEAPADGH
SHLQLNSQLFVGGTASRQKGFLGCIRSLQLNGVTLDLEERAKITPGVRPGCPGHCSSYGS
LCQNQGRCVERVHGFSCDCDQSAFTGAFCHKEVSASFQSSTSVAYNFKEPSEATRNSSAS
PFSIHSDTTPSGENISLSFRTNQSPALLLYVNSFYRQYLALLINSHDELEMRYKLHSSGD
VEVIGSRVTNLADGRLHTVIVRRLAGTVSVQIDQNTREDFSLTSGVEFTGIKSLMLGRVQ
ESDELDADLASLASLGFTGCLSGVCFNSIRPLKAALLQPDGPVIVRGPLSPSSCGSSPSL
ADPYATESTRSLSDQPGSVDPGQPLVNAIRSDSALIGGLIAVVIFVTAVASAILARFLCS
RKETYGNQEVKAAQPEDGHEPPFSSQADSLSALSENQKEYFI
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgattttaaacagtctttttctgctttgtgattggtccacagaggtatgtgacagccca
ctggtagccaatctgccaccgtcatcattcagaagctcctcccagctcaccaacagccat
gggccggtctttgcgaaggtcaacaggagagaaggagctggaggctggtcccctctggtc
tcagacaggtaccagtggttggaggtggatctggggaggcggacccggatcaccgcggtc
gcgacgcagggacgatacggcagctctgattggatgacggcgtacctgttgatgttcagc
gacacgggacacaactggaaacaacaccggcaggaagacagctttggggctttcccaggt
aacagtaatgcagacactgtggtccagtacaagcttaaacagccggtgatagctcgctac
ctccgcctgattcctctggactggaacccaactgggaggactggactcagactggagata
tacggatgtcgttatacgtctgacgtggccagcttcgatggcagcagcagtctggtcttc
cggcgcggcgctcgtcccggctggacgccgatggagacgatctctctgaagtttaaaacc
ctgaagaattgtgggacgctgcttcacgctgaggggaaccgaggtcacagcctcacgctg
gagctggagaagggccggctgctgctctaccaccaacaaggtgtgagttcatcctccggc
cgacagctcctcgtttccgtgggcagtctgctggacgaccagcactggcaccacgtaaag
ctggagaggctcagcactcacctcaacctcaccgtggataagaatactcatcaagtccac
atcccagttgagctcagccactgggaagttcaccagctgagtctgggcgctgtccagagc
catggactgcagaaagccgtcctctcccacaggaacttccatggctgcatggaaaacctg
ctctacaacgacctcaacctgatacacctggcgaaaaacaatcaccaccaccaccaccac
caccaggcctccgtggtgggcaatgtgaccttttcttgcgctgagcgagtttcggtctct
gtgacgttcactgactcccagagcttcctgcagttgccgggcgcgacatctcggtcatca
ggtgttgtctccgcggagctgcagtttcgcacgtggaacaaggctgggctactcttgacc
tttgacctcttacagcaggagggcacagtctggctgcacctgagtgagggaagactccgc
ctacagattaataaagctggcagggtccagctggagttgagcgcaggctcaggtctgagt
gacggtcagtggcatcacgtggagctgaagtccaggccgggtcacctgagcgtcacggtg
gacaaagacaaaggcgccgcggctcactccagcgccgctcttcctctcgccgcagacggc
cggctcttcttcggtgggtgccctgaggagagcagccaggagtgtgagaacccctttggg
gcgtttcagggctgcatgcgcctcgtcgccgtggataaccagccggtggacctgatcaag
gtgcagcaaaggcttctgggaaactacagccacctgcagatcgatatgtgcggcatcatc
gacaggtgctcccccagtcactgtgaacatggaggtaggtgcacccagtcgtggagcacc
ttccactgcaactgctccaccggcggctacagaggagccacctgccacagcccgaaatat
gagaagtcatgcgaggcgtacaaacacaaaggaaacgcatcgggacattatcacatagac
gtggacggcagtgggccaatcagaccccagctcatctactgtaacatgacagaggacatg
gcgtggatggtgatccagcacaataacacagaactgacgagagtgcgctcgtcccctgag
aggaaccaagagtccgcccactttgactacaagtctgaagaggagcagctgacggccatc
atcagccaatcagagcactgtgagcaggaactgtcctaccactgcaggaagtcccgcctc
ctcaacacaccagagggttctccgttcgcctggtgggtgggaggtccgggtccgggtgag
atccaggcgtattggggcggggctctgccaggcagccggcagtgtgcctgcggtctccgt
gacgactgtctggactcgaaccactactgcaactgtgacgccgactacgaccaatgggct
gatgactcgggtctcctgacccagaaggagagcctccccatcaggtctttggtgctgggt
gacctccagcgggcggggtcggaggctgcctacagggtgggaccgctacgttgtcatgga
gacaagaacttttggaacgctgcgttttttgacaaggagacgtcttaccttcactttccc
accttccacggagagctgaatgcggacatcgcgttcctgttcaagacaaagtcgtcctcc
ggggtcttcttggaaaatctaggcatcaaggacttcatccggatcgaactcggctccgcc
tcacaggtcgtcttctccctcgacgtgggcaacgggccgctggaggtccgggtggagacg
agcgtccagctgaacgacaaccggtggcacagcgtgcgagccgagcgcaacgtgaaggag
gcgtcgctgcgcgtggacgaattccccgccgccacgcaggaggctcctgctgacggacac
agtcatctgcagctcaacagccagttattcgtaggaggcaccgcctccagacagaagggc
tttctgggctgcatccgctctctgcagctgaacggcgtgactctggacctggaggagagg
gcgaagatcaccccgggagtccgacccggatgcccgggccactgcagcagctacgggtcg
ctgtgccagaaccaggggcgctgtgtggaaagagttcatggtttctcctgcgactgcgac
cagtcagccttcactggagccttctgtcataaagaggtctcggccagcttccagtcatcg
acgtccgttgcctacaacttcaaggagccctctgaagcgaccaggaacagcagcgcctcg
cccttctccatccactctgatacgacgccgagcggagaaaacatctccctgagcttcagg
accaaccagagtcctgccctgctactctacgtcaactctttctataggcagtacctggca
ctgctcatcaactcacatgacgagctggaaatgaggtacaagttgcacagcagcggagac
gtggaagtgatcgggagcagagtcacgaacttggctgacggacgtctgcacacggtgatc
gtcaggagactggcaggcaccgtctctgttcagattgaccagaataccagggaggacttc
agcttgacatctggtgtggagttcaccggcatcaaatcgctcatgctcggcagagtgcag
gagtcggacgagttggatgccgacctcgccagcttggcctctctcgggttcaccggctgt
ctgtcgggcgtttgcttcaactccatccgtcctctgaaagccgccctgctgcagcccgac
ggccccgttatcgtccgcggcccgttgtccccgtcgagctgtggctcctccccctctctg
gccgatccgtacgccacagaaagcacacgctccttatcagatcaaccgggttcagtggat
ccaggtcagcctttagtcaacgccatcaggagtgactcggcactaattggagggctgatt
gcagtggtgatcttcgtcaccgcggtcgcctcggcgatattggccagattcctctgcagc
aggaaggagacgtatgggaaccaggaagtcaaagcagcgcagccggaggacggccacgag
ccgcccttcagcagccaggcagactctctgagcgcgctcagcgagaaccaaaaggagtat
ttcatttag
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