Pseudoliparis swirei (Mariana hadal snailfish): 130195497
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Entry
130195497 CDS
T09868
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130195497 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130195497 (cnot1)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130195497 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130195497 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
130195497
NCBI-ProteinID:
XP_056273025
LinkDB
All DBs
Position
6:23236543..23258708
Genome browser
AA seq
2398 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQFLIQECVSLISKPNFIATLCYAVDNPLHYQKSLKPSAHLFTQLSKVLKLS
KVQEVIFGLALLNSSNTDLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEVLQ
LLLSHLLFGPKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDIPMDRILPD
SGELAKTMMESSLAEFMQEVGYGFCVSLDECRNIILQYGAREVTASQVARVLGMMARTHS
GLTDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYELD
HAGFIIRDSKGLHIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFSFA
DYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHCPD
MLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHSM
AEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKWLT
DKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAGSV
SQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQLDSLSGMGSLNL
GGTAPSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLSNPNPSTPFGGIGSLSSQLPGMDSG
PLATGIGSSIGSSLGMPTVNADPFGTRKMSTPGLNPPTFQQSKIEASDLSQVWPEANQNF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSLAL
AQVQSQSQQPGVPKAPQPGQPSTLVTTTTSTTTVAKTPTITRPTPSTFKKDVPPSINTTN
IDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYL
VMKRVSIEPNFHGLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKN
LGHWLGMITLAKNKPILYTDLEVKSLLLEAYLKGQQELLYVVPFVAKVLESSLRSMVFRP
QNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKDKLKSLEE
QLSAPKKETKPPEEMLPVSSTGDFVPFAAPPSTPAATTTACTTTGPPTPQFSYHDINVYA
LAGLAPHININVNISLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRK
DFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQRE
MMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVL
TYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWAT
DDVAQIYDKCMADLEQHLHAIPPALAMNPLTQALRSLLEAVALARNSRDGIAALGLLQKA
VEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNV
EAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLF
HTIETLMRTCAHSRANAPEGKVSPTTCLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQ
ASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRF
FRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVT
KINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTA
FCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPF
LRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPR
NMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRS
NLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDL
DTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPH
PWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7197 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgattcgctttcgctggctttgtctcaaatcagctatttggtggacaattta
acaaagaaaaactaccgagccagccagcaagaaatacagcatattgtaaatcgtcacggc
cctgaggcagacaggcatttactacgctgtctcttctctcatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagtttctgatccaggagtgtgtttcgctgata
tcgaagccaaactttatcgctactctgtgttacgccgttgacaatcccctgcactaccag
aagagtttgaagccttcggcccatttattcactcaactgagtaaagttcttaaactcagc
aaggtccaagaggtgatatttggacttgctttgctcaactccagcaacacagacctccga
ggttttgctgcgcagttcatcaagcagaaacttccggacctcctgcggtcatacgttgac
gcggatctcggaggaaaccaggaaggtggcttccaagacattgccatcgaggtcttgcag
ttattgctctcccatctcctctttggcccgaagggagccagtggggtagggcaagagcag
attgacgccttcctcaagacactttgccgagatttcccccaggagcgctgccctgtggtg
ctcgcaccactgctgtaccctgaaaaacgggacattcccatggacaggatcctgccagac
tcgggagagttagccaagaccatgatggagagttctctagcagaattcatgcaagaagtt
ggctatggcttctgtgtgagtctggatgagtgcagaaacataatcctccagtatggggcg
agagaggtgactgctagccaggtagccagggtcctgggtatgatggctcgtacccactct
ggcctaactgacggcattccactacagtccatctccgctccaggaagtggtatctggagc
gacggtaaggacaagaacgatggctcgcaggcccacacgtggaatgtcgaggtcctcatc
gacgtcgtgaaagaagtgaatcccaacctgaacttcaaagaggtgacgtacgaactggac
catgccggctttataatccgggacagtaaaggcctgcatatagtcgtgtatggcatccag
agggggttgggcatggaggtcttcccggtcgatctcatctatcggccatggaagcacgct
gagggacagctgtcattcattcagcactccctgatgagcccagaggtgttctcctttgca
gactacccttgccacactgtggccatcgacatcctgaaggccccaccagaggatgacaac
agggagattgcaacatggaaaagtctggatctggtggagagcctgcttcggctctcagag
gtgggacaatacgagcaggtgaagcagctgttcagcttcccaatcaagcattgtccagac
atgttggtgctggcattgctgcagatctccacctcatggcacacgctgcgccatgagctc
atctccaccctaatgcccatctttctgggtaaccacccaaactctgccatcatcctgcac
tacgcctggcatggacagggacagtctccctccatccgtcagctgattatgcattcgatg
gctgaatggtacatgagaggagagcagtatgaccaggccaagctgtctcgcatcctcgat
gtggcccaagacttgaagtcactatcgatgttgctgaatggaactccatttgcttttgtt
attgacctcgctgcacttgcctctcgccgtgaatacctcaaacttgataaatggctgacg
gacaaaatcagagagcatggagaacctttcatccaggcgtgtgtgactttcctgaagagg
cgttgcccgtccattatggggggtctggcccccgacaaggaccagcccaaaagtgctcag
ctgcccccggagacattagccaccatgctagcctgcctgcagtcctgtgctgggagcgtg
tcccaggagctgtcggagactatcctgaccatggttgcaaactgcagcaatgtaatgaat
aaagcccgacaaccaccaccaggggtaatgccaaagggacgtgcccccagcaccagcagc
ctggatgccatctctcctgtacagttggactccctgtccggcatgggttccttgaacctt
gggggcacagccccctcccacactcaaagcatgcaggggttccccacctcactgagttca
gctttcagtaatccccagtccccagcaaaggcctttccaccactgtccaacccaaacccc
agcacaccatttgggggcattggcagcctgtcctcccagctccctggtatggactctggt
cccttggccacaggcatcggctcgagtattggctctagtcttgggatgccaactgtcaac
gcagacccttttggcaccaggaagatgagcacaccaggcctgaacccacccacctttcaa
cagagtaagattgaggcctctgatctttctcaggtgtggcccgaggcaaaccagaacttt
agtaaggagatagacgatgaggcaaacagttacttccagcgcatctacaaccacccgcct
cacccaactatgtctgtagatgaggtactcgagatgctgcagaggttcaaggattcaacc
atcaagcgggagcgcgaggtgttcaattgcatgctacggaacttgtttgaggaataccgg
ttcttcccccaatacccagacaaggagctgcacatcactgcctgcctttttggtggcata
atcgagaagggtctcgtcacctacatggccctgggcctggccctccgatatgttcttgaa
gccttaagaaaaccctatggatccaaaatgtattactttggaattgctgccctagatagg
tttaaaaacagactaaaggactatcctcaatattgtcaacacttggcttcaattgcccac
ttcttgcaattcccccaccatttacaagagtgcgtgcagtatatcgagtatggccaacag
tcacgggaccctccggtgaagatgcaaggctccatcaccacccctggcagtctggcactg
gcacaggtccaatcccagtcgcagcaacctggtgtccccaaggctccacagccgggtcag
ccaagcactctggtcaccaccacgacgagtacaaccacagtagccaagaccccgaccatc
acaagaccaacacccagcaccttcaagaaggatgtgcctccctccataaacacaacaaac
attgacacactgctggtggccactgaccaaacagaaaggattgtcgagcctccggaaaat
gtccaagagaagattgctttcatcttcaacaacctttcccagtccaacatgacacagaag
gttgaggagttgaaagagactgtgaaggaagagtttatgccctgggtgtctcagtaccta
gtgatgaagcgtgtcagcattgagcccaactttcacggcctctactccaacttcctggac
actctcaagaaccctgagtttgtgaagatggtcctcaatgagacttacaggaatatcaag
gttctgttgacctccgacaaggcagctgccaatttctcagatcgctccctgttgaagaac
ttgggccactggttgggaatgattacactggctaaaaacaagcccatcctctacacggat
ctggaagtaaagtctctgctgctggaagcctaccttaaaggccagcaagagctactgtat
gttgttccttttgtggccaaagtcttggagtccagtctacgaagcatggtcttcaggccc
cagaacccctggaccatggccatcatgaatgttctcgctgagctgcatcaagaacatgat
ctcaagctcaacttaaagtttgagattgaagttctgtgtaagaacttgtctttggacatc
aatgacctcaagccaggaaacttgctgaaggacaaagacaaactaaagagtttggaggag
cagctgtctgcaccaaagaaagagacgaagcctccagaggagatgctgccagtttcttcc
acaggagactttgttccatttgcagcccccccctcaaccccagctgcaaccaccaccgct
tgcacaaccactgggcccccgaccccacagttcagttaccacgacatcaatgtgtatgcc
ttggccggcctggctccacacatcaatataaacgtcaacatctcattgctacaggcccat
ccccagttgaagcagtgcgttcggcagtcggtagagcgagcggttcaggagctggtgcac
cccgtggttgaccgctctatcaaaatagcaatgacgacctgtgagcagatcatcaggaag
gactttgccctggattcggaggagtcccgcatgcgtgtggctgcccaccatatgatgaga
aacctgaccgctggcatggccatgattacctgccgcgagcccctgctcatgagcatcgcc
accaacctgaagaacagctttgctgctgcacttcgggcaccaacaccccaacagagggag
atgatggaagaggctgcagccaggattgctcaagacaactgtgaactggcttgctgcttc
attcagaaaacagccgtggagaaggctggccctgaaatggacaagagactagccacggag
tttgagttgaggaagcatgcccgccaagagggacgtcgctattgtgatcctgttgttctg
acttaccaggctgaacgtatgcctgagcagatcagactcaaggtgggaggagtggacccg
aaacaactggctgtgtacgaggagtttgccaggaatgttccgggtttcttacccagcaat
gatctctcccaacccactggcttcttggctcagcccatgaagcaacaggcatgggccaca
gacgacgtggctcagatctacgataagtgcatggcagacctggagcaacatcttcatgcc
atccctccagccctggccatgaaccccttgacccaggctctgcgcagcctgctggaagcc
gtggccttggcgaggaactccagggacggcatcgccgcacttggccttctgcagaaggct
gtggaaggtcttctggatgccacgagcggtgctgatgccgacttgctgctccgctacagg
gagtgccacctgctggtgctcaaagcccttcaggacggacgtgcctatgggccacagtgg
tgcaataagcagataaccaggtgtctaattgagtgtcgtgatgagtacaaatacaacgta
gaggcagtggagcttctgatcagaaaccacctggtcaacatgcagcagtatgacctgcac
ctggcgcagtcgatggaaaatggacttcactacatggcagtcgcttttgccatgcagctg
gtgaagctcctgctggtggatgaacgcagtgtcagccatgtcacagaggccgacctcttc
cacacaattgagactttaatgagaacctgtgcacactccagagccaacgcacccgagggc
aaagtcagtccaactacttgccttccccagctgatggatgttgttcgttccaactatgag
gccatgattgaccgggcccacggaggacccaacttcatgatgcactctgggatttcacag
gcgtcagaatatgacgatcctccaggccttcgggagaaggcggagtacctcctgagggaa
tgggttaacctgtaccactcggcggctgccggcagggatagcaccaaagctttctctgcc
ttcgtaggccagatgcaccagcagggcatccttaagaccgatgacctgatcacaaggttc
ttccggttgtgcacagaaatgtgtgttgagataagctacagagctcaggccgagcagcag
cacaacccagcagccagtgcagccatcatccgggccaagtgttaccacaacctggatgcc
tttgtgcggctcatagcgctgctggtcaagcactctggagaagccaccaacacggtgaca
aagatcaacctcctcaacaaggtgctgggtatcgtcgttggggtgctgattcaggaccat
gatgtccgtcagacagaattccaacagctgccataccatcgcattttcatcatgctgctg
ttggagctcaacgctcccgaacatgttctggagaccatcaactttcagacactcactgcc
ttctgcaataccttccacatcctgagacccaccaaagctcccggctttgtgtacgcctgg
ctggaactcatctcccatcgcatcttcatcgccaggatgctggctcacactccgcagcag
aagggttggccgatgtacgcacagctgctgatcgatctcttcaagtacctggccccattc
ctgaggaatgtagagctcaacaaacctatgcaaatcctctacaagggcacactgcgagtg
ctcctggtcctgctgcatgacttcccagagttcctgtgtgactaccattacggcttctgt
gacgttatcccgcccaactgcatccagctccgcaaccttatcctcagtgcctttccacgc
aatatgaggctccctgaccctttcacacctaatctcaaggtggatatgctgagtgagatc
aacattgcgccccgtatcctcaccaacttcacaggcgtgatgccttcccagttcaaaaag
gacctggactcctacctgaagacccgttcaccagtcaccttcttgtctgagctgcgcagc
aacctgcaggtgtctaacgagccagggaaccgctacaacatccagctgatcaacgctctc
gtgttgtatgtaggcacgcaggcaatcgctcacatccacaacaagggcagcaccccctcc
atgagcaccatcacccactctgctcacatggacatcttccagaatctagccgtggacctg
gacactgaagggcgttacctgttcctgaatgcgatcgccaatcagctgcgctaccccaac
agccacactcactacttcagctgcaccatgctctatctgtttgccgaggccaacacggag
gccatccaggagcagatcaccagggttctgttggagaggctgatcgtgaacaggcctcac
ccgtggggtctcctcatcaccttcatcgagctgatcaagaatcctgccttcaagttctgg
agccacgactttgtgcactgtgctcccgagatcgagaagctgttccagtcggtggcccag
tgctgcatgggacagaagcaggcccagcaggtgatggagggcaccggtgccagctag
DBGET
integrated database retrieval system
