KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130197919
Entry
130197919         CDS       T09868                                 
Symbol
col6a1
Name
(RefSeq) collagen alpha-1(VI) chain
  KO
K06238  collagen type VI alpha
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04510  Focal adhesion
pswi04512  ECM-receptor interaction
pswi04518  Integrin signaling
pswi04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    130197919 (col6a1)
   04518 Integrin signaling
    130197919 (col6a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    130197919 (col6a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    130197919 (col6a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pswi04147]
    130197919 (col6a1)
   00536 Glycosaminoglycan binding proteins [BR:pswi00536]
    130197919 (col6a1)
Exosome [BR:pswi04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   130197919 (col6a1)
Glycosaminoglycan binding proteins [BR:pswi00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   130197919 (col6a1)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   130197919 (col6a1)
SSDB
Motif
Pfam: VWA Collagen VWA_2 VWA_3
Other DBs
NCBI-GeneID: 130197919
NCBI-ProteinID: XP_056276877
LinkDB
Position
8:complement(17888161..17912284)
AA seq 1008 aa
METLGLLALLCAFMAGAQTQNQKERFADCPVDIFFVLDTSESVALRKKPPKFYIDQVINF
TNNFIDELREYRHRCDRVLTWNSGALHYSDEVKLIRGLSDMRTDRKALKDDITHIDFIGK
GTYTDCAIRDGLGHLLNGGTHYQENKYIVVVTDGHPITGYKEPCGGVQEAVNEAKQHGVK
VFAIAILPDQEETRLSLIATNPNYRQNFTAADDTRSTKMGTIRTIIEMITNETKDVCCSF
DCIAPGGDAGPKGDIGANGETGRLGMPGEKGDVGNVGKLGDAGPVGYTGMKGDRGGKGGK
GGRGHKGYKGDKGQGGDDGSDGHKGKDGFAGLPGCKGSPGSDGLEGDSGPKGDAGPYGVK
GGKGQSGKDGGPGRPGNYGPLGPQGERGPRGNNGDKGERGDDGGTGPDGNRGERGQFGEK
GEQGSRGNRGPRGGMGEPGPRGEQGREGSTGTNGDPGQSGRAGSPGYRGDEGPPGPEGPK
GPRGIKGAPGDRGQMGERGEDGMPGNGTVGCLGFQGYPGSRGGSGEPGGKGTPGPKGDDG
DAGDPGPDNFEPGPPGTKGAKGHRGPEGNPGPIGPPGPPGTDECEILDIIMKLCSCCECK
CAALDLAFIVDSSESIGSANFALAKDFIITVIDRLTKDQQLKFASNHSGLSVVQYSGSKA
QEKIRLEATGLIAFKEKVRNMKWLAEATYTGEALDFALSNTLSLMTHENKVVIVLTDGRS
DHSRDPVPLNVLCGKDLLVGGLGIKDYSGREPNHEQLEELVCKSDAKPGFVFVLDNFAEL
LDDTFLQNLTSRICQNKTCPDYKCPLSFTEDVDILVMMDSSASVGQKNFATTKTFVSRLA
ERFLTAERKRGATVKMGVAQYSRSSRMEQSPTTNLTLVSYKTEEAAFQNDGTNVLEALEF
AAKSLAGRGDSSGGRRKLVLFSDGRSQDVTEDLLENRVREVADAGVEVFVIAVGTQVNEV
NLRVLVSKGRQGDINYTQRHLFRVSDYNSLLHGVFHQTVSRRVSTNKL
NT seq 3027 nt   +upstreamnt  +downstreamnt
atggagactctcggtctcctcgcgctgctgtgcgcctttatggctggagcgcaaacgcag
aaccaaaaagaaaggtttgcggattgtccggttgacattttctttgtgctggatacatcc
gagagtgtcgccctcagaaagaaacctcccaagttttatattgaccaggtcataaacttc
accaacaacttcatagatgaactcagggaatatcgccaccgatgcgaccgcgtcctgacg
tggaactcgggagctctgcactacagcgacgaagtcaaactcatccgcgggctgagcgac
atgaggaccgaccgcaaggccctgaaggatgacatcacgcacatcgacttcatcggcaag
ggcacgtacaccgactgtgccatcagggacggtctcggtcacctgctcaacgggggcacg
cactaccaagagaacaagtacatcgtggtggtgaccgatggtcatcctatcaccgggtac
aaggagccgtgtggaggcgtgcaggaggccgtgaacgaagccaagcagcacggagtcaaa
gtgttcgccattgccatcttacctgaccaggaggagacccggctgtcgctcatcgccaca
aatccgaactacagacagaacttcaccgctgcagacgacaccaggtccacgaagatggga
accatcagaaccatcatagaaatgatcacaaacgagacgaaggatgtgtgctgctctttc
gactgcattgctccgggaggagacgccggaccgaagggagacatcggagcaaacggagaa
acaggtcgattggggatgcccggagagaagggagacgttggcaacgtgggcaaacttgga
gatgccggtcctgttggttacactggaatgaagggcgaccgcggtggcaaaggaggaaag
gggggcagaggacacaaaggctacaagggagacaaaggtcaagggggagacgacggcagt
gacggacacaagggcaaagatggtttcgccggtcttcccggctgcaaaggatctcccgga
tcagacggcctggagggggattctggaccaaagggagacgctggtccttatggagtgaaa
ggaggaaaaggacaatccggaaaagacggcggaccgggaaggcccggaaactacggccca
ctgggacctcagggcgagcggggacctcgcggaaacaacggggacaaaggagagcgcggc
gatgacggcggaaccggaccggatgggaaccgcggagagagaggacaatttggagagaag
ggcgagcaaggttcccgtggaaacagaggtccaagaggaggcatgggggagccagggccc
cgcggagagcaggggagggagggctcaaccggcaccaacggagaccccggccagtcgggc
agagccgggtctcctggctacagaggagatgaaggcccacctggaccagagggtcccaaa
gggccgagaggaatcaaaggagctccgggagacagaggccagatgggggagaggggagaa
gacggcatgccaggaaacggcactgtgggttgtctcggcttccagggttatcctgggtcc
cgcggaggctccggtgaacctggcggcaagggaacccctggacccaaaggagacgacgga
gacgccggagatccaggccccgacaacttcgaaccaggacctccaggaaccaaaggggcc
aaaggtcacagaggaccagaaggcaatccgggacccattgggcctcctggaccaccagga
accgatgaatgtgaaatcctggatatcatcatgaagctctgctcttgttgtgagtgtaag
tgtgcggctctggacctcgccttcatcgtggacagctcggagagtatcggctccgccaac
tttgctctcgccaaagacttcatcatcaccgtcatcgaccggctgaccaaagaccagcag
ctcaagtttgcaagcaaccactccggactgagcgtcgtccagtacagtggctccaaggcc
caagaaaagatccgactggaagccaccggcctcatcgcctttaaagagaaagtgaggaac
atgaaatggctggcggaggccacgtacacaggcgaggccctggatttcgctctgagcaac
acactcagcctgatgacccatgagaacaaagtcgtgatcgttctcactgacggacgttcc
gatcactccagggacccagttcccctcaacgttctctgtggtaaagatctgctggtggga
ggtttgggaataaaggactactcgggccgtgagcccaaccacgagcagctcgaggaattg
gtttgtaagagcgacgccaaacccggcttcgtctttgtcctggacaacttcgccgagctg
ctggatgacactttcctgcagaacctcacatccagaatctgtcaaaataagacgtgcccc
gactacaaatgtcccctgtctttcaccgaagatgtcgacattttggtgatgatggacagc
tcggcaagtgtgggccagaagaacttcgccactaccaagaccttcgtcagccgcctggcc
gagcgtttcctgaccgccgagaggaagaggggggccaccgtcaagatgggtgtggcccag
tacagccgaagctcccgcatggagcagtcgccgaccaccaatctaaccctcgtatcctat
aaaaccgaagaggcggccttccaaaacgacggcaccaacgtgttagaggccctggagttt
gccgcgaagagtttagccggtcgcggagactcgtcgggcggcaggaggaagctggtgctg
ttctccgacggccggtctcaggacgtcaccgaggacctgctggagaatcgcgttcgcgag
gtggcggacgctggcgtggaggtcttcgtcatcgccgttggcacccaggtcaatgaggtc
aacctgcgcgtgctggtgagcaaggggcggcagggcgacatcaactacacccagcgccac
ctgttccgggtctcagactacaactctctgcttcacggggtcttccaccaaactgtctcc
cgccgggtgtccaccaacaagctttag

DBGET integrated database retrieval system