Pseudoliparis swirei (Mariana hadal snailfish): 130200799
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Entry
130200799 CDS
T09868
Symbol
cacna1c
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1C isoform X1
KO
K04850
voltage-dependent calcium channel L type alpha-1C
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04010
MAPK signaling pathway
pswi04020
Calcium signaling pathway
pswi04260
Cardiac muscle contraction
pswi04261
Adrenergic signaling in cardiomyocytes
pswi04270
Vascular smooth muscle contraction
pswi04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
130200799 (cacna1c)
04020 Calcium signaling pathway
130200799 (cacna1c)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
130200799 (cacna1c)
09153 Circulatory system
04260 Cardiac muscle contraction
130200799 (cacna1c)
04261 Adrenergic signaling in cardiomyocytes
130200799 (cacna1c)
04270 Vascular smooth muscle contraction
130200799 (cacna1c)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pswi04040
]
130200799 (cacna1c)
Ion channels [BR:
pswi04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
130200799 (cacna1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
CAC1F_C
Motif
Other DBs
NCBI-GeneID:
130200799
NCBI-ProteinID:
XP_056281310
LinkDB
All DBs
Position
10:14135460..14327418
Genome browser
AA seq
2260 aa
AA seq
DB search
MLRGLFQRKPKHERLEEEPEVRFKGLLVSERDLGYTYVQPGGSDYPPPPPLPPAVLTIEL
GGGGDHRGGGRDGDNHGLGAVGLAPEHNATPGAAVSWQAAIDAARQAKTMGNPASGGGAG
PAAGGGGPISTVSSTQRKRQHYGSKPKKQTTSSAMRPPRALLCLTLKNPIRRACISIVEW
KPFEIIILMTIFANCVALAVYIPFPEDDSNATNSNLERVEYLFLIIFTVEAFLKVIAYGL
LFHPNAYLRNGWNLLDFIIVVVGLFSAILEQATKGDGGTPIGGKAAGFDVKALRAFRVLR
PLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFMGKMHKTCNHEQT
GTIAEEKPAPCAPEGAYGRHCKHNGTECMMGWEGPNEGITNFDNFAFAMLTVFQCITMEG
WTDVLYWMQDAMGYELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGDFQKL
REKQQLEEDLKGYLDWITQAEDIDPENEEEGMDDDKPRNLSMPASENESVNTDNAPGGDV
EGETCCTRLANRISKSKFSRYSRRWNRLCRRKCRAGVKSQFFYWLVIFLVFLNTLTIASE
HHRQPDWLTEVQDIANKVLLALFTGEMLLKMYSLGLQAYFVSLFNRFDSFVVCGGILETI
LVQTKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVASLLNSVRSIASLLLLLFLFIII
FSLLGMQLFGGKFNFDVTRRSTFDNFPQSLLTVFQILTGEDWNSVMYDGIMAYGGPSFPG
MLVCIYFIILFICGNYILLNVFLAIAVDNLADAESLTSAQKEEEEEKERKKLARLASPEK
RHANEKPPLEKKKKKKKEKIELKSITSDGETNTATKITMDNYGGDESEEKNPYPANDYID
EEDEEPEMPVGPRPRPLSDTQLKEKAIPIPEARAFFVFSHTNRFRVLCHKIVNHNIFTNL
ILFFILLSSISLAAEDPVKNDSFRNQILGYADYVFTGLFTIEIILKMTAYGAFVHKGSFC
RNYFNILDLVVVSVSLISSGIQSSAINVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVA
IRTIGNIVIVTTLLQFMFACIGVQLFKGKFFFCTDTSKQTQAGCRGSYIMYKDGDVTKPE
RAHRVWENSDFNFDDVLQGMMALFAVSTFEGWPGLLYRAIDSHTEDVGPVYNYRVVISIF
FIIYIIIIAFFMMNIFVGFVIVTFQEQGEQEYKNCELDKNQRQCVEYALKARPLRRYIPK
NPSQYKVWYVVNSTYFEYLMFTLILLNTICLAMQHHGQTKNFNDAMNILNMVFTGLFTVE
MFLKLIAFKPRHYFVDAWNTFDALIVVGSIVDIAITEVYGLQNSEENARISITFFRLFRV
MRLVKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQMFGKIALRDHTQI
NRNNNFQTFPQAVLLLFRCATGEAWQEIMLACLPVRPCEKGSTNETNLDHEDCGSQFAII
YFVSFYMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWAEYDPEAKGRIKH
LDVVTLLRRIQPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVMFNATLFALVRTALRIKT
DGNLEQANEELRAIVKKVWKRTSMKLLDQVVPPAGDDEVTVGKFYATFLIQEYFRKFKKR
KEQGLVAKVAPKTALSLQAGLRTLHDIGPEIRRAISGDLTVEEELDKGLKEPVSAASEDD
IFRVKRTGGLFSNHVNHSNQSDGRASFPQSFTTQRPLHISQQGSPCEGESPSHEKLVDST
TFTPSSYSSSGSNANINNANNTGMIGVVTQGISRFPSPSISTVDGHTGQPLTPILLPRSA
WCFPPKSSGSSESRRPIIRRGEGSTEETYDESFGDDGEYHEDDHSLSSDMLVYHDETCKQ
LNPMEEGEEGEGRRGGGEGGWQSPRRVFLCPTTLARRSSFHLECLRRQSRPDVSQKTSLP
LHLVHHQALAVAGLSPLLRRSHSPTLFSRLCSSPPASPTAHGGDASYQRVPPLRLEGFNS
HEKLNTSLPSVNCGPWYSDSNGNSRVPSPNPSVSASNQRPPRPVSLTVPSLLGKDSSSLC
HGSAGSLVEAVLISEGLGHFAQDPSFIEVTKAELADACDMTIEEMEHAADNILNGDASSA
SRHSPDGDLLPFHTAAATHRDQGVGEGEEEAGGSRGSVHGPSSLEERRELLAEERGREEE
EEEEEEGEEGQHRSSVVIGGARQRNSGLLEDEDMECVTSL
NT seq
6783 nt
NT seq
+upstream
nt +downstream
nt
atgctgaggggcctgtttcagaggaaaccgaaacatgagagactggaggaagagcctgag
gtcagattcaaaggcttgctggtgtcagagagagacctgggatatacatacgtccagcct
ggaggctccgactaccctccccctcccccacttcctcccgccgtcctcaccatcgagctc
ggcggcggtggcgaccaccgcggtggcggaagggacggggacaaccacgggttgggcgcg
gtgggcctggccccggagcacaacgccacgccgggggcggccgttagctggcaggcggcc
atcgacgccgcgaggcaggcgaagacaatgggcaaccccgcgtcgggcggaggggcgggg
cctgcggcgggagggggcgggcccatctccacggtcagctccacgcaaaggaagagacaa
cactatggctctaagcccaagaaacagacaacgtcgtcggccatgaggccgccgcgggcc
ctactctgtctcacgctcaagaaccccatcaggagagcctgcatcagcatcgtcgagtgg
aaaccatttgagatcatcatcctgatgaccatttttgccaactgtgtggccttagccgtc
tacatccccttccctgaggacgactcaaatgccaccaactccaacctggagcgcgtggag
tatctgttcctcatcattttcacggtggaggcgttcttgaaggtcatagcctacggcctg
ctcttccaccccaacgcctacctgaggaacggctggaatctgctcgacttcatcatcgta
gtcgtggggttattcagtgcaatcttggagcaggccaccaagggggacgggggcactcct
attggagggaaggcagcgggcttcgatgtcaaggctctgagggcattcagagtactcaga
cccctcagactggtctctggagtacccagtttacaggtcgtgttgaactccataatcaaa
gccatggttcctctgctccatatcgccctgctggtcctcttcgtcatcatcatctatgcc
atcattggcctggagctcttcatgggcaagatgcacaagacctgcaatcacgagcaaacg
ggcaccattgcagaggagaagccggcaccgtgtgcacccgagggggcttacggtcgacac
tgtaagcacaacggaaccgagtgcatgatgggatgggagggccccaacgaaggcatcacc
aactttgacaacttcgcctttgccatgttgacggtgttccagtgtataaccatggagggc
tggacggacgtgctgtactggatgcaggatgctatgggctatgagctgccatgggtctat
tttgtctctctcgtcatcttcggctcctttttcgttctcaatctcgttctgggggtgttg
agcggagagttttccaaggagagagagaaggccaaggcacgtggtgacttccagaaactc
agagaaaaacagcaactggaggaggacctcaagggatatttagactggatcactcaggct
gaagacattgacccagagaatgaagaggagggcatggacgatgataaacctagaaacctg
agcatgccagcaagtgagaatgaatcagtcaacacagacaacgcccccgggggagacgtg
gagggggagacctgctgtacccggctagcaaataggatctccaaatccaagttcagtcga
tactctcggaggtggaacaggctgtgtaggaggaagtgccgggcaggggtcaaatcccag
tttttctattggctggtcatcttcctggttttcctcaacactctgaccatcgcctctgaa
catcaccggcagcctgactggttaacagaagtacaagacatagccaacaaggtgctgctc
gcactcttcactggtgagatgctgttgaagatgtacagtctgggtctgcaggcgtacttt
gtttcgctcttcaatcgcttcgacagcttcgtcgtatgtggagggattctcgagaccatc
ctggtgcaaaccaagatcatgtcccctctcggcatctcagtgttgcgctgcgtacgcttg
ctgagaatcttcaaaatcaccagatactggaactccctgtccaacctggtggcatccctt
ctaaactctgttcgctccattgcttctctgctgctcctgctcttcctcttcatcatcatc
ttctccctgctcggcatgcagctgtttggggggaaattcaacttcgacgtgaccagacgg
agcacctttgacaactttccccagtcgttgctcactgtgtttcagatcctaacgggagag
gactggaactctgtgatgtatgatggtatcatggcgtacggtggaccgtccttccccggc
atgctggtctgcatctactttatcatcctcttcatctgcggaaactatatcttactgaac
gtcttcttggccattgctgtcgacaatctggctgacgctgagagcctgacatccgcccag
aaagaggaggaagaggagaaggagaggaagaaactcgccaggttggccagtccagagaaa
cgtcacgccaacgagaagccgcctctggagaagaagaaaaagaagaagaaggagaagata
gagctgaagtccatcacctctgatggagagacgaacactgctactaagattaccatggat
aactacggtggagatgagagtgaagagaagaacccatatccggccaatgattacatcgac
gaagaggacgaagagccagagatgccggtgggtccgaggccccggcccctctccgacact
cagctgaaggagaaggccattcccatacccgaggcgcgcgccttcttcgtcttcagccac
accaaccgattcagggttctatgccacaagatcgtcaaccacaacatcttcacaaacctc
atcctcttcttcatcctgctcagcagcatcagtctggcagcagaagacccggtcaaaaac
gactccttcagaaaccagatcctgggctatgcagactacgtctttactggactcttcacc
atagagatcattcttaagatgacagcctacggggccttcgtccataaaggttccttctgt
agaaactatttcaatattttggacctggtcgtcgtcagtgtttctctcatctcctctgga
atacagtccagtgcaattaatgtggtgaagatcctgcgagtcctgcgagtgctcagaccc
ctgagagccatcaacagagccaaaggactgaagcatgtggtgcagtgcgtctttgtggcc
atccggaccatcggcaacatcgtcatcgtcaccacgttgctccagttcatgttcgcatgt
atcggagtacagctctttaaggggaagtttttcttttgtaccgacacctcgaaacaaact
caggcaggttgcaggggctcctacataatgtataaggacggggacgtgacgaagcctgaa
agagcccacagagtgtgggagaacagtgactttaactttgacgatgtgctgcaaggcatg
atggctctgtttgccgtgtcgaccttcgagggctggccagggttactgtaccgggccata
gactctcacactgaggacgtcgggcccgtctacaactaccgcgtggtcatctccatcttc
ttcataatctacatcatcatcatcgccttcttcatgatgaacatcttcgtcggtttcgtc
atcgtcacattccaggagcaaggcgagcaggaatataagaactgtgagctggacaagaat
cagcgtcagtgtgtggaatatgctttgaaggcccggccgttgcgtcgctacattcccaag
aacccttcccagtacaaggtgtggtacgtggttaactccacctactttgagtacctgatg
ttcacactcatccttctcaacaccatctgtctggccatgcagcatcatggacagaccaaa
aatttcaatgatgccatgaacatcctcaacatggtcttcaccggactcttcactgtggag
atgttcctgaaactgattgccttcaaacccaggcattattttgttgatgcatggaacaca
tttgatgccttgatagttgtgggtagcattgttgacatagcgatcactgaggtttacgga
ctgcagaactctgaagagaacgccaggatctccatcaccttcttccggctgttccgcgtg
atgaggctggtgaagctgctgtctcgcggggaagggattcggaccctgctgtggaccttc
atcaaatccttccaagctctgccctacgtagctctgcttatagtgatgctattcttcata
tacgctgtcatcggcatgcagatgtttggtaagatagcgctgcgagaccacacgcagatc
aacaggaacaacaatttccagacgttccctcaggcggtgctgctgctcttcagatgtgca
acaggtgaggcatggcaggagatcatgctggcgtgcttgcccgttcggccgtgtgagaag
ggatcgaccaatgagaccaacttggaccacgaggactgtggcagccagtttgccatcatc
tactttgtcagcttctacatgctctgtgcctttctgatcatcaacctgtttgtggcagtc
atcatggacaactttgactacctgacacgtgattggtcaatcctggggccgcatcatctt
gacgaattcaagaggatctgggctgaatatgacccagaggctaaagggagaataaagcat
cttgatgtggtgaccctgctgcgaagaatccagcccccactgggctttggaaagctctgt
ccacaccgagtagcatgcaagcgcctggtgtcgatgaacatgcctctgaacagcgatgga
accgtgatgttcaacgccacgctgttcgccctggtcagaaccgcactcaggatcaagaca
gacggaaacctggagcaggccaatgaggaactgagagcgatagtgaagaaggtctggaag
agaaccagcatgaagctcttggatcaagtagtgccccctgctggagatgatgaggtaaca
gtcgggaagttctacgctaccttcctcatccaggaatatttccgcaagttcaagaagagg
aaagaacaagggctggtggcaaaggtggcccccaaaacggccctttctctgcaggcgggc
ctgcggacattgcatgacattggtccagagattcggagggccatctctggagacctgacg
gtggaggaggagctggataaaggcctgaaggagccggtgtcggctgcatccgaggatgat
atcttcagggtaaagcgtacgggtgggttgttcagcaaccacgtcaaccactccaaccag
agtgatggccgcgcctccttcccacagtccttcactacccagcgtcctttgcacatcagt
cagcagggctccccttgcgaaggcgagagtccgtcccacgagaagctcgtggactcgacc
actttcaccccttcctcttactcctcatcgggctccaatgccaacatcaacaatgccaac
aacaccggcatgatcggggtggtgacccagggcatcagtcggttcccgagcccatctata
agcactgtggacgggcacacgggacagccgctcacccccatcttgctgccgaggtctgcg
tggtgctttcctccaaagagctcggggtcaagtgagagccgccggccgatcatccggaga
ggcgagggttcgacggaggagacgtatgacgagagcttcggcgacgatggggagtaccac
gaggacgaccactcgctctcctctgacatgctggtgtatcacgatgaaacgtgtaagcag
ttgaatcccatggaggaaggagaagagggagaaggcagaagaggaggaggagaaggaggg
tggcagtctcccaggagagtcttcctctgccccaccactctggcgcgtagatcgtctttc
catttggagtgtctcaggagacagtcgaggccagacgtctcccaaaagacgtctctaccg
ctacaccttgtgcatcatcaggctctggcagtcgcggggttgagtcctctgctaagacgg
agtcactcgcctactctcttcagccggctgtgctcctcgcctccagccagtcccacagcc
catggcggtgacgcgtcctaccagcgagtgccccctctgaggctagagggcttcaactca
catgaaaagcttaacaccagcttgccctctgtcaactgtgggccctggtacagcgacagt
aatgggaacagccgggttcccagtcccaaccccagtgtgtcagcgtccaatcaaagacca
ccgcggccggtgtcgctcacagtgccctcgctactgggaaaagactccagctcgctgtgc
cacggcagtgcaggcagtctggtggaggcagtgctcatatcagaaggtttgggccatttc
gcccaggacccgtcgttcatcgaggtgaccaaagccgagttggccgacgcgtgcgacatg
accatcgaggagatggagcacgccgccgacaacattctcaacggcgacgcctcctccgcc
tcccggcacagccccgacggcgacctcctccccttccacacagcagcggcgacgcaccgg
gaccaaggggtcggcgaaggcgaggaagaagccggaggaagcagaggctccgtccacggg
ccgtcctcgctggaggagcggcgggagctgctcgcagaggagcggggacgagaggaggaa
gaggaggaggaggaggagggggaagaggggcagcacagaagctcggttgtgatcggagga
gcgcggcagaggaacagcgggctgctggaggacgaggatatggagtgtgtgacgagtttg
tag
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integrated database retrieval system
