Pseudoliparis swirei (Mariana hadal snailfish): 130201052
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Entry
130201052 CDS
T09868
Symbol
scn1laa
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pswi04040
]
130201052 (scn1laa)
Ion channels [BR:
pswi04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
130201052 (scn1laa)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
PFF1_TM
New_glue
Neur_chan_memb
Lustrin_cystein
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
130201052
NCBI-ProteinID:
XP_056281691
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All DBs
Position
2:complement(10644843..10667783)
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AA seq
1736 aa
AA seq
DB search
MLIMCTIVANCAFMTLNGPPDWAKNVEYMFTGIYTLESVIKILARGFCIGKFTFLRDPWN
WLDFSVIVMAYLTEFLNLGNFSALRTFRVLRAFKAISVIPGLKTIVGALFQSVKKLADVM
ILTVFCLSVFALIGLQLFMGHLKQKCIRTIENSTSSYNGTDINGTEKSSFDWEAYTLNTS
NYYVLPNKRDPLLCGNGSEAGKCPEGFTCLRAGKNPDYNYTSFDSFGWAFLSLFRLMTQD
YWENLYQQTLRAAGKPYMIFFVLVIFLGSFYLINLILAVVAMAYEEQSQATIKEALEKEE
EFQAMLEQLKRQQEDAQAAATAAAESGEASDKATGPESSSDSSKLSSKSAKDRRNRRKKK
KEEEGKGADEKDPKSESQDSMRKGRCRFSVDANQLNYDMKGSSAHQADSTDTEYRQASGG
THQEFMDLLDGPEARQRALSIASVITSTMEELEDSRQRCPPCLYNLAHTFLIWECCPAWL
KIKRVMKLFVTDPFVDLAITICIVLNTLFMAMEHYPMSLSFINMLYVGNVIFTSIFTAEM
VLKIIAMDPYYYFQEKWNIFDGIIVTSSLMELFLENVVGMSVLRSFRLLRVFKLAKSWPT
LNTLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKYYKDCVCRISIDCTLPRWHMS
DFFHSFLIVFRVLCGEWIETMWDCMEVAGTHMCITVYMMVMVIGNLVVLNLFLALLLSSF
SADNLAATEDDSDMNNLQLAITRIHKGIAFVKSLLRSSCTSVCLRRKKKGTAEDKSLDEL
NKPLGPNGIPNSTIKDFPRNGNGDVTGVDKNGDKYIVSSKSDDSIMSFINNPSLTVTVPI
AVGESDFENLNTEDFSSASSDAAGCHVIGDDQLSSSEGSTIDFGPGGEGGESVDIELEES
MEPDGCFPDGWVQKFKCCQVNAEVGWWKVWWMIRKTCFRIVEHNWFESFIIFMILLSSGA
LAFEDVYIEKRKTIKTILEFADKIFTYIFILEMLLKWVAYGYAKYFTNAWCWLDFLIVDV
SLVSMVANAMGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIFNVLLVC
LIFWLIFSIMGVNLFAGRYGHCVDKLSNKDFPVSVVKNQSDCIRMGNNARWKNFKINFDN
VGMGYLALLQVATFKGWMNIMYAAVDSQSKQNEQPEYEINLKMYLYFVVFIIFGAFFTLN
LFIGVIIDNFNQQKKKFGGQDLFMTEEQKKYYNAMKKLGSKKPQKPIPRPSNKIQGYIFD
LTTKQAFDIIIMVLIWLNMVAMMVETEDQSQEKAKILHKINVVFIMVFTGECLLKMIALR
YYFFTNGWNVFDFIVVVLSIIGMFLSSLIEKYFVSPTLFRVIRLARIGRVLRLIKSAKGI
RTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKRESGIDDLFNFETFGNSMIC
LFQITTSGGWDGLLAPILNKHEDDCNSTKEHPGSHIKGDCGNPTVGIAFFVSYIIICFLV
VVNMYIAVILENFSVATEESADPLSEDDFETFYEVWERFDPHATQFMEYKRLSEFADALD
PPLRIAMPNKMELISMDLPMVSGERIHCLDILCAFTKRVLGEGGEMDILRGEMEERFLAS
NPSKLSFEPITTTLRRKQEDTSATIIQRAFREYIKKHAATNPSNTSTDKIEEDETHIGKG
YPVTDKLQDISSAEKSELIPSTAHQPSCNNVTTNGKNKYEKDKSEKEVEGKDVGEQ
NT seq
5211 nt
NT seq
+upstream
nt +downstream
nt
atgctaatcatgtgcactatcgtcgccaactgtgcatttatgacactgaatggaccgcct
gattgggcaaagaatgtcgagtacatgttcaccggaatttatacgcttgaatccgtcatt
aagattttagctcgagggttctgcataggaaagttcacttttctaagagatccctggaac
tggctggatttcagtgtaattgtcatggcgtatttaacagagtttttaaacctaggcaat
ttttcagcacttcgcacattcagagtgctaagagcttttaaagctatttcagttatccca
ggcctgaagaccatcgttggtgcattgttccagtcagtgaagaagctggcagatgtgatg
attctcaccgtcttctgcttgagcgtctttgccctcatagggttgcaactgtttatggga
catttaaagcaaaagtgtatacggacaattgaaaattccacctcatcttacaatgggacc
gacataaatggaacagaaaaaagcagttttgactgggaagcgtacacgctcaacaccagt
aattattatgttcttccaaacaaacgagatccactgctttgtggaaatggcagcgaagct
gggaagtgtccagaggggtttacttgcctcagagcgggaaagaacccagactataattac
accagctttgactcctttggttgggccttcctctctctctttagactgatgacacaggat
tactgggaaaacctgtaccagcagacgctgcgggcagctgggaagccctacatgattttc
tttgtgctggtgatattccttggttccttttacctgatcaacttgatcttggcagtagta
gccatggcctacgaggagcagagccaggccaccataaaggaggcgttggagaaggaggaa
gagtttcaggccatgcttgagcagctgaaacggcagcaggaggacgctcaggccgcagca
actgcagctgcagagagcggggaggccagcgataaagccactggccctgagagctcctct
gacagctccaagcttagctccaaaagtgccaaagacagacgcaacagacgaaaaaagaag
aaggaggaggagggcaaaggggctgatgagaaggatcctaaatctgagtcgcaggacagt
atgaggaaaggtcgctgccgcttctctgtggatgcaaaccaactcaactatgacatgaaa
ggctcatccgcacatcaggctgacagtactgacacagagtacagacaggccagtggagga
acacaccaggagtttatggacctcctcgatggcccagaggccagacagagagcactcagt
atagctagtgtcataaccagcactatggaggagcttgaagattcgaggcagaggtgtcct
ccttgtttgtacaatcttgcccacaccttcctgatctgggaatgttgtccagcatggctg
aagatcaagagggtgatgaaactatttgtgacggatccatttgtggacctagccatcacc
atctgcattgtactcaacacattgtttatggccatggagcattatccaatgagcctcagt
ttcatcaacatgctgtatgttggcaatgtgatattcactagcatcttcacggctgaaatg
gtcctcaagatcattgctatggacccatactattacttccaggagaaatggaatattttt
gatggaatcattgtcacgtcaagcttgatggagctttttttggaaaacgtggttggcatg
tctgttctgaggtcattcagattgctaagagtattcaagttggctaaatcgtggcccaca
cttaacactctgatcaaaataattggtaattcagtgggggctttgggcaacctgacgctg
gtgttggccattatcgtcttcatctttgctgtggtcggcatgcagctgtttggaaaatac
tacaaggactgtgtgtgtagaatctctatcgattgcacacttccccgttggcacatgagt
gacttctttcattcattcctcattgtgttccgagtgctttgtggagagtggatagagacc
atgtgggactgtatggaggtggctgggacccacatgtgcatcactgtctacatgatggtc
atggttatcggaaaccttgtggtgctgaacctgttcctggccctgcttttgagttcattc
agtgctgacaatctggcagcgacggaggatgacagcgatatgaacaacttgcagctggcc
attacacggattcacaaaggcattgcctttgtcaaatccctgcttcgaagcagctgcacc
agtgtctgtctcaggagaaagaagaaagggacagccgaggacaaatctctggatgagctc
aacaaacctttagggccgaatggtatccccaacagtaccatcaaagactttcccaggaac
ggaaatggggatgtgaccggagtggacaaaaatggagacaagtacatagtcagcagcaag
agtgatgattctataatgtctttcatcaacaatcccagtttgactgtcacagttcctatt
gctgtgggagagtctgactttgaaaacctcaacactgaggacttcagcagtgcctcgtct
gatgcagcaggatgccatgtgattggagatgaccagctcagctcctctgagggcagcaca
atagactttgggccaggcggggagggaggagagtctgtagacattgaattggaagaatct
atggaacctgacggctgctttcctgatggctgggtgcaaaagttcaagtgctgccaggta
aatgcggaagtgggctggtggaaggtgtggtggatgattagaaagacctgtttccggatc
gtggagcacaactggtttgagagcttcatcatcttcatgatcctgcttagcagtggagcg
ctggcctttgaggatgtctacattgagaagaggaagaccattaaaacaattttggaattt
gcagacaaaatattcacctacatcttcattctggagatgttactgaagtgggtggcgtat
ggatatgccaagtattttacaaatgcctggtgctggctggactttctcattgttgatgtc
tcactggtcagtatggtagccaatgccatgggatattctgaactcggtcccatcaagtct
cttcgaactctgcgagctctgaggccgctgagagccttgtcacggtttgaaggcatgagg
gtggttgtcaatgccctgcttggagccattccttccatcttcaatgtgctgctggtatgt
ctcatcttctggcttatcttcagcatcatgggagtgaacctatttgcaggaaggtacggc
cattgtgtcgacaaactctcaaataaggatttcccggtgtctgtggtgaaaaaccagtca
gattgtatacgtatgggcaacaacgctcgctggaagaacttcaaaatcaactttgacaat
gttggcatgggttaccttgcactgctgcaagtggctacattcaagggctggatgaatatc
atgtatgctgctgtggactctcaaagcaagcaaaatgaacaaccagaatacgagatcaac
ctgaagatgtacctgtattttgttgttttcatcatatttggagccttcttcacactcaat
ctctttattggtgtcatcatagacaatttcaatcagcaaaagaaaaagtttggaggtcaa
gacctcttcatgactgaagaacagaagaaatactacaatgccatgaaaaagctgggatca
aagaaaccacaaaagcctattcctcggccatcaaacaaaattcaaggatacatctttgac
ttaaccacaaaacaagcattcgatataataattatggttctcatatggcttaatatggta
gccatgatggtggaaactgaagatcaatctcaagaaaaggccaagattctccacaaaatt
aatgtagttttcattatggtcttcaccggagagtgtttgttgaagatgattgctcttcgc
tattactttttcacaaacggttggaatgtatttgatttcatcgtcgtcgtcctgtcgatc
attggcatgtttctctcttctctgatcgagaagtattttgtttcaccgaccttgttcaga
gtcattcgcttggcccggattggccgtgtcctgcggcttattaaaagtgccaaaggaatc
cgcacactcctgtttgccttgatgatgtcacttcctgccttgttcaacatcggtctctta
ctcttcttggtgatgtttatctatgccatctttggcatgtcaaactttgcttacgtcaag
agggaatcaggcatcgatgaccttttcaattttgagacatttggcaacagcatgatctgt
ttgttccagatcacgacttcaggagggtgggatggcctacttgctcccattctcaacaaa
catgaagacgattgtaacagtaccaaagagcatcctggcagccatattaagggagactgt
gggaatcctactgtggggatcgccttctttgtgagctacatcatcatctgtttcctggtt
gtggtgaatatgtacattgcagttatcctagaaaacttcagtgtggccaccgaggagagc
gcggacccactaagtgaggatgattttgaaacgttttatgaggtctgggaaaggtttgat
cctcatgcaacacagttcatggagtacaaaaggctgtctgaatttgcagatgctctggac
ccaccattacgcattgccatgcctaacaagatggaactgatctctatggatttgcccatg
gtgagtggtgaacgcattcactgcctggacatcctgtgtgcatttacgaaacgtgttctg
ggggagggcggggagatggacattctaaggggggagatggaggagcgcttcctggcctcc
aatccttcaaaattgtcctttgaacccatcactaccaccctccgccgcaaacaagaggac
acatccgccactatcatccaaagggccttcagggagtatataaagaaacatgctgctaca
aatccctctaacacatccacagataagattgaagaggatgaaacacacattggcaaaggg
tatcctgtcacggacaaactccaagacatttctagtgccgagaaaagcgaattgattcct
tcgacagcccatcaaccttcatgtaacaatgtgacaacaaatggaaaaaacaaatatgaa
aaagacaaaagtgaaaaggaggttgagggcaaagacgtcggagagcaatag
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integrated database retrieval system
