Pseudoliparis swirei (Mariana hadal snailfish): 130202219
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Entry
130202219 CDS
T09868
Symbol
ift88
Name
(RefSeq) intraflagellar transport protein 88 homolog
KO
K16474
intraflagellar transport protein 88
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pswi03037
]
130202219 (ift88)
Cilium and associated proteins [BR:
pswi03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
130202219 (ift88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_8
TPR_19
TPR_6
TPR_14
TPR_16
TPR_7
TPR_11
ANAPC3
SNAP
TPR_9
TPR_17
ARM_TT21_5th
TPR_CcmH_CycH
ARM_TT21_4th
TPR-S
SHPRH_helical-1st
RNPP_C
ARM_TT21_C
Consortin_N
DUF2989
Coatomer_E
ARM_TT21
RPN7
HEAT_Nup120
TPR_15
ARM_TT21_2nd
HAT_PRP39_C
DUF2225
Motif
Other DBs
NCBI-GeneID:
130202219
NCBI-ProteinID:
XP_056283557
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All DBs
Position
2:complement(25376204..25413350)
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AA seq
819 aa
AA seq
DB search
MEHVHLAVEEEDLYSGYNDYNPAFDSEELENDVGFQQAVRISHGRRPPMTAKFPGSAIGP
RPLATSFGARIPLASSMGRTTTGAVQDGAARPMTAVRAAGYTSSLTRGSTFDPLGQSRGP
AAPLEAKNEDTPEEKIKILEKKVNDLIKESCMAQSSGVSQLALEKAKEAGRKERTLVRQR
EQSGNADHVNLDLTYSVLLNLANQYANNDMFPEALNSYQVIVKNKMFSNAGRLKVNMANI
YVKQKSYPKAIKFYRMALDQISNAHKEMRIKIMQNIGVVFVRMGQYSDAITSFEHIMSES
PNIKTGFNLILCYYAIGDRERMKKAFQKLISVPLGVDDEDKYLPSHEDADSEMVLEAIKN
DRLHQMERDLKVLAEKYIMTAAKLIAPAIETSFVTGFDWCVDMVKSSQYVELANDLEINK
AITYLRQKDFNQAVETLKTFEKKDSRVKSAAATNLSFLYFLEKDYDQADRYADLAVTADR
YNPAAIINKANIMFVKQDYEKAGELYKEALRNDSSCTEALFNLGLSYKALNRLEEALDCF
LKLHAILRNSAQVMYQLANLYPTDREMCDDPQQAIEWLLQVLSVTHTDPRALAKLGELYD
GEGDKSQAFQYYYESFRYFPSNIEVIEWLGAYYIETQFCEKAILYFERATLIQPTQVKWQ
LMVASCYRRSGNYQRALETYRDIHCKFTDNMECLRFLVRLCTDMGLKEVQEYATKLKKAE
KMKEIREQRGKSGSARGRREGREGSAGSTDSSRRERLSAKMRSLPASNEPYEASSPKEMD
TSYVDPLGPQTERPKTGAKKRLEDDDFADEELGDDLLPE
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atggagcacgtgcacctggcggtggaggaggaggacctttattccggttacaacgactac
aatcccgcgttcgactccgaggagttggagaatgacgtgggcttccagcaagcagtgagg
ataagtcatggaagaagaccgccgatgacggctaagtttcctggctctgccattggccct
cggcctctagcgacctcctttggcgcccggatccctctggcctcttccatgggccggacc
accaccggagctgtgcaggatggagcggcccgtccgatgacggccgtcagagccgcaggt
tacacctcatctctgacccgcggctcgacctttgaccctctgggtcagtccagaggccct
gcagctccactcgaagccaagaacgaggacacgcctgaagagaaaatcaagatcctggag
aagaaagtgaacgacctgataaaagagagctgcatggcgcagagcagcggagtctctcag
ctggctctggaaaaggccaaggaggctgggaggaaggagcgaacgctggtgagacagagg
gagcagtctggcaacgcggaccacgtcaacctggacctcacctactcggtgttgctcaat
ctggccaaccagtatgcgaacaacgacatgttcccagaggccctgaacagctaccaggtg
atcgtgaagaacaagatgttcagcaacgcaggtcgcctgaaggtcaacatggccaacatc
tacgtgaagcagaagagctaccccaaggccatcaagttctaccgcatggctctggaccag
atctccaacgcccacaaggagatgaggatcaagatcatgcagaacatcggcgtggtcttc
gtccgcatgggccagtactcggacgccatcacgtccttcgagcacatcatgagcgagagc
cccaacatcaagacgggcttcaacctcatcctgtgctactacgccatcggggaccgggag
cggatgaagaaggccttccagaagctcatctcggttcctctgggcgtggacgacgaagac
aagtacctcccgtcccatgaggacgctgactctgagatggtcctcgaggccataaagaac
gacaggctgcaccagatggagagagatctaaaagtcctggctgagaagtacatcatgacg
gcggctaagctcatcgctccagccatcgagacatcatttgtgaccggattcgactggtgt
gtggacatggtgaagagctctcagtatgtggagctcgccaacgatctggagatcaacaaa
gccatcacctacctgagacagaaggacttcaaccaggcggtggagactctgaagacgttt
gagaagaaggacagcagagtgaagagcgctgcagccaccaacctctccttcctctacttc
ctggagaaggactacgaccaggccgaccgctacgccgacctcgccgtgaccgccgaccgc
tacaatccggccgccatcatcaacaaagccaacataatgttcgtcaagcaggactacgag
aaggctggagagttgtacaaggaggccctgaggaacgactcctcctgcaccgaggccctc
ttcaacctgggtctatcctacaaagcactgaatcgtctggaggaggctctggactgcttc
ctgaagctccacgccattctgaggaacagcgcccaggtcatgtaccagctggccaacctg
tatcctactgaccgggagatgtgtgatgacccccaacaggccatcgagtggttgcttcag
gtcctgagtgtgacccacacagacccccgggccctggccaaactgggagagctctacgac
ggcgagggagacaagtcccaggctttccaatactactacgagtccttcaggtacttcccc
tccaacatcgaggtgatcgagtggctcggggcgtactacatcgagacgcagttctgcgag
aaggccatcctgtactttgagagagccacgctcatccagcccactcaggtgaagtggcag
ctgatggtggccagctgctacagaagaagtgggaactaccagagagctctggagacctac
agagacatccactgcaagttcaccgacaacatggagtgcctgcggttcctggtgaggctg
tgcacagacatgggactcaaggaggttcaggaatacgccaccaagctgaagaaagctgag
aagatgaaggagatcagggaacagagggggaagtcaggcagcgccagagggcggcgagaa
gggagagagggcagcgccggcagtaccgacagcagcaggagagagcggctgagcgccaag
atgaggtcacttcctgcttccaacgagccctacgaggccagcagcccaaaggaaatggac
acgtcctacgtggaccccctggggccccagacggagaggcccaagaccggagccaagaag
cgcctggaggacgacgactttgctgacgaagagctgggagacgacctgctgcccgagtag
DBGET
integrated database retrieval system
