Pseudoliparis swirei (Mariana hadal snailfish): 130202658
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Entry
130202658 CDS
T09868
Name
(RefSeq) syndecan-1-like
KO
K16338
syndecan 4
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04512
ECM-receptor interaction
pswi04514
Cell adhesion molecule (CAM) interaction
pswi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130202658
04514 Cell adhesion molecule (CAM) interaction
130202658
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130202658
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pswi00535
]
130202658
Proteoglycans [BR:
pswi00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
130202658
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Motif
Other DBs
NCBI-GeneID:
130202658
NCBI-ProteinID:
XP_056284336
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All DBs
Position
12:complement(11127585..11131906)
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AA seq
159 aa
AA seq
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MRNSVAASLIFALGLIVPVSASFSSRPEDLEGSGYELDSLGSGSGDWSEQEEIENIKDQP
SSKGTRNTSHGPPVLHFDDAYKGSGSGFIVVANSKSFLENKEIFAAVIAGGVVGVAFAAT
LAALLIYMWQKKDNGGYMQGQQRTSGGIYHRPNMEVVRV
NT seq
480 nt
NT seq
+upstream
nt +downstream
nt
atgaggaactctgtggccgcttctctgatcttcgcgctggggctaatcgttcccgtcagc
gcgtcgttttcttcccgtcctgaggatttggagggatcgggatatgaattggacagtttg
ggctctggttccggggattggtcagaacaagaggaaatagaaaacatcaaggatcaaccc
agcagcaaaggaaccaggaatacttcccatggccctccggtcctgcactttgatgatgca
tacaaaggcagcggatcgggatttattgttgtggcaaacagcaaaagtttcttggagaac
aaagaaatatttgccgctgttattgcaggaggtgtagtaggggtggcctttgcggctaca
ctggcagcactattaatctacatgtggcaaaagaaagataacggaggatacatgcagggt
cagcagaggacttcaggtggaatttatcacagacccaacatggaggttgttcgtgtttaa
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