Pseudomonas sp. W03: SD196_02995
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Entry
SD196_02995 CDS
T11012
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pswo Pseudomonas sp. W03
Pathway
pswo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pswo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SD196_02995 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pswo03021
]
SD196_02995 (rpoB)
03400 DNA repair and recombination proteins [BR:
pswo03400
]
SD196_02995 (rpoB)
Enzymes [BR:
pswo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SD196_02995 (rpoB)
Transcription machinery [BR:
pswo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SD196_02995 (rpoB)
DNA repair and recombination proteins [BR:
pswo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SD196_02995 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
XOT23194
LinkDB
All DBs
Position
640922..644995
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDQVRDIGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALNYSTEEILNAFYDTNVFQIKGET
LNLELVPSRLRGEIASFDIKDASGKVIVEAGRRITARHINQLEKAGITQLEVPFDYLIGR
TVAKAVVHPATGEIIAECNTELTVDALAKIAKAQVVRLETLYTNDIDCGPFISDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKEAAETLFGNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GPGVLSKEDIVEVLKTLVAIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNKYGFLESPYRVVK
EGLVTDDIVFLSAIEEADHVIAQASATLNEKGQLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVNDDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVQKGD
KVSRSDILADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVQAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKMQLDE
IRKDLNEEFRIVEGATFERLRSALVGAKADGGPALKKGAEITDEYLDGLERGQWFKLRMA
EDALNEQLEKAQAYISDRRQMLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMLEEQRKIAELRAFLNEIYNEIGGRQENLDELNDNEIIALANNLKGGVPMATP
VFDGAKEREIKAMLKLADLPESGQMRLFDGRTGNQFERTTTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIELETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtatttgctggccatccagctggattcctatcgcgaattcctgcag
gccggcgcgagcaaggaccaggttcgagacatcggcctgcatgcggccttcaagtccgtt
ttcccgattatcagctattccggcaatgctgccctggaatacgtcggctaccgtctgggt
gagccggcattcgacgtcaaggaatgcgtgctgcgcggtgtgaccttcgccgtcccgctg
cgtgtgaaagtgcgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaggaacaggaagtctacatgggggaaatccccctgatgaccgagaacggtaccttc
atcatcaacggtaccgagcgcgtcatcgtttcccagctgcaccgttccccgggtgtgttc
ttcgaccacgaccgtggcaagacccacagctccggcaagctgctgtactccgctcgcatc
atcccctaccgcggctcctggctggacttcgagttcgatccgaaggactgcgtgttcgtc
cgtatcgaccgtcgccgcaagctgccggcgtccgtcctgctgcgcgcgctgaactacagc
accgaggaaatcctcaacgcgttctatgacaccaacgtcttccagatcaagggcgagacc
ctgaacctggagctggtgccgtcgcgtctgcgtggcgagatcgccagcttcgacatcaag
gatgccagcggcaaggtcatcgtcgaagcgggtcgtcgtatcactgcgcgccacatcaac
cagctcgagaaggcgggtatcacccagctggaagtgccgttcgactacctgattggccgt
accgtggccaaggccgtcgtgcacccggctaccggcgagatcatcgccgagtgcaacacc
gagctgaccgtcgacgccctggccaagatcgccaaggcccaggtcgtgcgtctggaaacc
ctgtacaccaacgacatcgactgcggtccgttcatctccgacacgctgaagatcgactcc
accagcaaccaactggaagcgctggtcgagatctatcgcatgatgcgtcctggtgagccg
ccgaccaaggaagctgccgagaccctgttcggcaacctgttcttcagcgccgagcgttac
gacctgtcggccgttggccgcatgaagttcaaccgtcgtatcggtcgcaccgagatcgaa
ggcccgggcgtactgagcaaggaagacatcgtcgaggtcctcaagaccttggttgccatc
cgtaacggtaaaggcatcgtcgacgacatcgaccacctgggtaaccgtcgtgtccgttgc
gtcggcgaaatggccgagaaccagttccgcgttggcctggtgcgtgtagagcgcgcggtc
aaggaacgcctgtcgatggccgaaagcgaaggcctgatgccgcaggacctgatcaacgcc
aagccggtggctgctgcgatcaaggaattcttcggttccagccagctgtcgcagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgccgcgtctccgcactcggccca
ggtggtctgacccgtgagcgcgcaggcttcgaggttcgtgacgtacacccgacccattac
ggccgcgtgtgcccgatcgaaacccctgaaggtccgaacatcggtctgatcaactccctg
gctacctacgcccgcaccaacaagtacggcttcctggaaagcccgtaccgcgtggtgaag
gaaggtctggtcaccgacgacatcgtcttcctctccgcgatcgaagaagctgaccacgtc
atcgctcaggcgtccgcgaccctgaacgaaaaaggtcagctgatcgacgaactggtagcc
gtacgtcacctgaacgaattcaccgtgaaggcgccggaagacgtcaccctcatggacgtt
tcgccgaagcaggttgtttccgtcgctgcctcgctgattccgttcctcgagcacgacgac
gccaaccgtgcgctcatgggttcgaacatgcagcgtcaggctgtaccgaccctgcgcgct
gacaagccgctggtaggtaccggcatggagcgcaacgtcgcccgtgactccggtgtctgc
gtggttgctcgccggggcggcgtgatcgactccgtcgatgccagccgtatcgtggtgcgc
gtgaacgacgacgaagtcgagactggcgaagccggcgtcgacatctacaacctgaccaag
tacacccgttccaaccagaacacctgcatcaaccagcgtccgctggtgcagaagggtgac
aaggtttcgcgcagcgacatcctggccgacggtccgtccaccgacatgggtgaactggct
ctgggtcagaacatgcgcgtagcgttcatgccctggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgcgtggtccaggaagatcgtttcaccacgatccacattcaggaa
ctgacctgcgttgcccgtgacaccaagctcggcccagaagaaatcaccgcggacatcccg
aacgtgggtgaggctgcgctgaacaagctggacgaagccggtatcgtctacgtcggcgcc
gaagtgcaggccggcgacatcctggtcggcaaggtcaccccgaaaggcgagacccagctg
actccggaagagaagctgctgcgcgcgatcttcggtgagaaggcgtccgacgtgaaggac
acctccctgcgcgtgccgaccggcaccaagggtaccgtcatcgacgtacaggtcttcact
cgtgatggcgtagagcgcgacagccgcgccctgtccatcgagaagatgcagctggacgag
atccgcaaggatctgaacgaagagttccgcatcgtcgaaggcgcgaccttcgagcgtctg
cgttccgctctggtcggtgccaaggccgacggcggtcctgccctgaagaaaggcgcagag
atcaccgacgagtacctggacggcctcgagcgcggccagtggttcaagctgcgcatggcg
gaagacgctctgaacgagcagctggagaaggcccaggcctacatcagcgaccgccgtcag
atgctggacgacaagttcgaagacaagaagcgcaagctgcagcagggcgacgacctggct
ccgggcgtactgaagatcgtcaaggtctacctggccatcaagcgccgcatccagccgggc
gacaagatggcgggccgccacggtaacaagggtgtggtctcggtgatcatgccggtcgaa
gacatgccgcacgacgccaacggtactccggtcgatatcgtcctgaacccgctgggcgta
ccgtcgcgtatgaacgtcggtcagatcctcgaaacccacctgggcctcgcggccaagggt
ctgggcgagaagatcaaccgcatgctcgaagagcagcgcaagatcgccgaactgcgtgcc
ttcctgaacgagatctacaacgagatcggcggccgccaggagaacctggacgagctgaac
gataacgagatcatcgctctggccaacaacctcaagggcggcgtgcccatggctaccccg
gtgttcgacggtgccaaggaacgcgagatcaaggccatgctgaagctggccgatctgccg
gagagcggccagatgcgtctgttcgatggccgcaccggcaaccagttcgagcgtacgacc
accgttggttacatgtacatgctcaagctgaaccacctggtcgatgacaagatgcacgcg
cgttccaccggctcctacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggccagcgtttcggggagatggaggtctgggctctggaagcctacggtgccgcctac
accctgcaggaaatgctgaccgtgaagtcggacgacgtgaacggccgtaccaagatgtac
aagaacatcgtggacggggatcaccgcatggaggccggcatgcccgagtccttcaacgtg
ctgatcaaagagatacgctcgctcggcatcgatatcgaactggaaaccgaataa
DBGET
integrated database retrieval system
