Psychrobacillus sp. AK 1817: D0S48_12005
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Entry
D0S48_12005 CDS
T06219
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psyh
Psychrobacillus sp. AK 1817
Pathway
psyh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psyh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D0S48_12005 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyh03400
]
D0S48_12005 (mfd)
Enzymes [BR:
psyh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D0S48_12005 (mfd)
DNA repair and recombination proteins [BR:
psyh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D0S48_12005 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
RecG_dom3_C
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QEY21338
UniProt:
A0A5J6PLE0
LinkDB
All DBs
Position
complement(2414880..2418407)
Genome browser
AA seq
1175 aa
AA seq
DB search
MELLSNLLIEDIQMQKLVKDLESGTDQTLVTGLSGSARAVFTKMLHKALEKPILIVTPNL
LHAQKLTEDLVKLLGEELVRLYPADELIAADISIASPELRAQRLEALDHMLNVKRGVYIV
PVSGLKKRMGNVNDWKNSSIVLVEGEDLILDTFLQNLVDMGYVRQPMVTAPGEFALRGGI
IDIYPLYLEDPIRIELFDTEIDSIRTFSAEDQRSLKKLKDIRILPATEYVLTKGKKVLLA
QKLEDALAESLKKVKLPDMKEKFYQNIQQDIELLKQGEQPKEYMKYISLIEEDSFLGDYF
DPSGIILFDELGRIQEVTETLEKEEKDWYLSLLEEGKTVHDVKPSYNLKEIIQKLPNFKV
YLSLFSRTFSGVVIKKAMNVSCKPMQNFHGQMHLLKNETERFAQGKFRVVILADGKDRVQ
KVHTVLEDYEIVSKIGPTAKDFDKPGIFIVEGDLEAGFELPLQRIAVITDSELFKQKHKK
KARTQKVTNAERIKSYSEIKPGDNVVHIHHGIGKYIGIETLLVNGIHKDYLHIRYRGEDK
LFVPVDQIDLIQKYVASGEKDPKLHKLGGADWKKTKSKVSAAVQDIADELIKLYAKREAE
VGYAFEPDGEMQHTFEAAFPYEETEDQLRTIEEVKRDMERPRPMDRLVCGDVGYGKTEVA
IRAAFKAVMEGKQVAFLCPTTILAQQHYETMMERFQDFPIQVGLLSRFRTKKQQAETING
LKKGLIDIAVGTHRILSKDVEYQDLGLLVVDEEQRFGVKHKEKIKQLKTNVDVITLTATP
IPRTLHMSMIGVRDLSVIETPPKNRFPVQTYVMEYNGALVREAIERELARGGQAFFLYNR
VEDITRKVDEIQMLVPTARVGYAHGQMSETELESVIISFLEGEYDVLVTTTIIETGIDIP
NVNTLIIHDADKMGLSQLYQLRGRVGRSNRVAYAYLMYQRDKVLTDVAEKRLQAVKEFTE
LGSGFKIAMRDLSIRGAGNLLGSQQHGFIDSVGFDLYTQMLEDAIQEKQTGIKKEELQEI
EIVLGTDAYISDEYIPDGYQKIQMYKSVKAMEKEEEYLDLVDELQDRFGDIPLEAERLLR
IARMKVWGKEAGVESIKESDKVTTIRLSAEGTKTIDGAKLLEESMKYGRAIGFNVDKTNL
VLTIDERKTGKYNAFDVLEDIMSLLPKSKKILEVN
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggaactgctaagtaatttattgatcgaagatatacaaatgcaaaagctagtgaaagat
ttagagagtggtactgatcaaactttagtgacgggcctctcagggagtgccagggctgtc
tttactaaaatgctgcataaagcattagaaaaaccaatccttattgtcacaccaaacctg
ctacatgcgcagaagcttactgaggatttagttaagctcctaggagaagaattggtgaga
ttgtatcctgcagatgaattgatagctgcagatatatccattgcaagccccgagttgcgt
gcgcaacggttagaagcactagaccatatgctcaatgttaaacgaggagtctacattgtc
ccggtgtctggcttgaaaaagcgtatgggaaatgtaaatgattggaagaatagctccatc
gtccttgtagagggagaggaccttatattagacaccttcctgcaaaatctagtggatatg
ggttatgtccgtcagccgatggttaccgcacctggggagtttgcgcttcgtggcggcata
attgatatttatcccttgtatttagaggatccaattcgtattgaattgtttgatactgag
attgattcaatccgtaccttctctgcggaagatcagcgttccttaaagaagttaaaggat
attcgtatactaccagctactgaatacgtactgactaaggggaaaaaggtattgcttgct
caaaagctagaggacgcattagcggagagcctgaaaaaggtaaagcttcctgacatgaag
gagaagttctatcaaaacattcaacaggatatagagttattaaaacaaggcgaacaaccg
aaagaatacatgaagtatatttcgttaatagaagaagatagtttcttaggagattatttt
gatccgagtggaattattttatttgacgagctcggacgtattcaagaagtaacggaaacg
ttagaaaaggaagagaaggattggtatctttcattgctcgaagaaggaaaaacagtccac
gatgtaaaaccatcgtataacttaaaagagattatccaaaagcttcccaactttaaagta
tatctatccttattctcgcgcacgttctccggggtagttattaagaaagcgatgaatgta
tcttgtaagccaatgcaaaatttccatggacaaatgcatttgttgaagaacgaaacggag
aggtttgcccaaggtaaatttagagtagtcattttggcagacggtaaggaccgtgtacaa
aaagttcatactgtactagaagactatgaaatagtatctaagattgggccaactgcaaag
gactttgacaaacctggtatttttatcgttgagggtgatttagaggctggcttcgaattg
cctctgcaaagaattgcggttattacagattctgaattgtttaagcaaaagcataagaaa
aaagcgagaacacaaaaagtaacaaacgcagaacgtattaaaagctactcagagataaaa
cctggagacaacgttgtacatatccatcatgggatagggaagtatataggaatagaaaca
ttacttgtaaacggaatccataaagactatttgcatatccgctaccgtggagaagataag
ttatttgtccctgtagatcaaattgacttaatacaaaaatatgtagcttccggagaaaag
gatccaaagcttcataaactgggtggagcagactggaagaaaacaaaatctaaagtatct
gcagcagtgcaggatattgcagatgagcttatcaagctctatgcaaaacgagaggccgag
gtgggatatgcattcgaaccagatggggaaatgcaacatacctttgaggcagcattccca
tacgaggaaacagaagaccagcttcgtacaatagaagaagttaaaagagacatggaaaga
ccgaggccgatggatcgcttagtatgcggggatgttggttatggtaagacagaagttgct
attcgtgctgcgtttaaagcagtcatggaaggtaaacaagtagcattcctatgtcctacg
accatacttgcacagcaacattacgagacgatgatggagcgttttcaagattttccgatt
caagtaggtctgttaagtcgctttagaactaaaaagcaacaggcggaaactattaatggt
ttgaaaaagggtcttatagacattgctgtgggtacgcacagaatcttgtcaaaagacgtg
gagtatcaagatctcggactattagtcgtcgatgaggagcagcgttttggggtgaagcat
aaagagaagattaaacagctaaaaaccaacgtagatgttattacactaacagctacacca
attcctcgtacacttcatatgtcgatgataggcgtacgtgatttgtccgtcatcgaaact
cctcctaaaaaccgttttccagtacaaacctatgtaatggaatataacggtgcgttagta
agagaggcaattgaaagagagctagcaaggggaggacaggcatttttcctctacaatcga
gtagaagacattacacgcaaagtggatgagattcaaatgcttgttccaactgctagagtt
ggatacgcacatgggcagatgtctgaaacagagttggaatcagtaatcatcagtttctta
gagggtgaatatgatgtgcttgttacgacgactattatagaaactgggattgatataccg
aacgttaatacattaattattcatgatgctgataagatggggctatcccagctgtaccaa
ttacgtggtcgagtgggtcgttccaaccgtgttgcctatgcctatttaatgtatcaaaga
gataaagtattgactgacgtagcggaaaaaagactacaggcagtgaaggaattcacagag
ctaggttccgggttcaagatagcaatgcgagatttatcgattcgtggagctggaaatcta
cttggctcccaacagcatgggtttatcgattcagtaggttttgatctatatacgcaaatg
ctagaagacgctatccaagaaaaacaaaccggtattaaaaaggaagaattacaggaaatc
gaaatagtattaggaacagatgcttacatttcagatgaatatatccctgacggatatcaa
aaaattcaaatgtataagagtgttaaagcaatggaaaaagaagaagagtacctcgattta
gtagatgaactacaggatcgttttggagatattcctttagaagctgaaagattgctccgt
attgctaggatgaaggtttggggcaaagaggccggtgtagaatctatcaaagaatccgat
aaagttactactatccgtttaagtgcagagggtaccaagactattgatggagcgaagctt
ctggaggaatcgatgaaatatggtcgtgccataggctttaatgtagacaagacaaatcta
gttttaacgatcgatgaacgtaaaactgggaagtataatgcgtttgatgttttagaagat
atcatgagtttattgcctaaatcaaaaaagatattagaagtaaattaa
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