Psychroserpens sp. NJDZ02: E9099_02470
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Entry
E9099_02470 CDS
T05945
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
psyn
Psychroserpens sp. NJDZ02
Pathway
psyn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psyn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E9099_02470 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psyn03021
]
E9099_02470 (rpoB)
03400 DNA repair and recombination proteins [BR:
psyn03400
]
E9099_02470 (rpoB)
Enzymes [BR:
psyn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E9099_02470 (rpoB)
Transcription machinery [BR:
psyn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E9099_02470 (rpoB)
DNA repair and recombination proteins [BR:
psyn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E9099_02470 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QCE40330
LinkDB
All DBs
Position
complement(546519..550331)
Genome browser
AA seq
1270 aa
AA seq
DB search
MLVTQAERLNFSSIVNRTEYPDFMDIQIKSFQDFFQLETKSEERGDEGLYNTFMENFPIT
DTRNQFVLEFLDYFIDPPRYAIDECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFCINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINQVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKSGLKKVIGRKL
AARVLNTWHEDFVDEDTGEVVSIERNEIVLDRDTELDKDNIEEILDIDVKTILLHKESAQ
QGDYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYSLGEV
GRYRMNKKLQLDIGMDKQVLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SSQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVYAK
VNSMGFIETPYRKVTDGVVDIKSEPIYLSAEEEEDKLIAQATVKVDENGKILHDKVIARM
EGDFPVMDPKDIHYTDVAPNQISSISASLIPFLEHDDANRALMGSNMMRQAVPLLRPQAP
IVGTGLERQVASDSRVLINAEGEGVVQYVDANEIVIKYERSEDDAKVSFESDVKSYALVK
FRKTNQGTSINLTPIVKKGDKVSKGQVLSEGYATQKGELALGRNMKVAFMPWKGYNFEDA
IVISEKVVREDIFTSIHIDEYSLDVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLHGVVINKKLFS
RAVKDKRKRAQDKEDINKLENLYYTKFDDLQAVLVEKLFTIVNGKTSQGIFNDLGEEVLP
KGKKFTLKMLNAVDDYTHLTGGTWTTDDHTNKLVADLIHNYKIKENDLQGSLRREKFTIS
VGDELPAGIIKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGQDLGRTYATPIFDGATIDQINALTDEAGIPRYGHTY
LYDGGTGDRFDQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASATLREILTVKSDDVVGRAKTYEAIVKGEPMPEPGLPESFNVLMHELK
GLGLDIRLEE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgttagtaacacaagctgaaagattaaatttctcgtctattgtaaatagaacagaatac
ccagatttcatggatattcagattaaatccttccaggattttttccagttagaaacaaaa
tctgaagaaagaggtgatgaaggtctttataacaccttcatggaaaactttccaattaca
gacacacgtaatcaattcgttttagaatttttagattactttattgatccgccaagatat
gctattgatgagtgtattgaaagaggactaacctatagcgttccgcttaaagcaaggtta
aagttatattgtacagaccctgaacatgaggatttcgagaccattgtccaggatgtgtat
ttaggaactataccttacatgactccatctggtactttttgtatcaatggtgcagaacgt
gtggtagtctctcaattgcatagatcaccaggtgtcttttttgggcaatctttccatgca
aatgggaccaaattatattcagctagagttattccttttaaaggatcatggatagagttc
gctacagatattaaccaagtaatgtatgcgtacattgatagaaaaaagaagttacctgta
accactttatttagagctattggttttgagcgtgataaagatattttagagatttttgac
ttagccgaagaggttaaagtatcaaagtctggactaaaaaaggtaattggtcgtaaactt
gctgcacgtgtattaaacacttggcatgaagatttcgtagatgaagatactggtgaagta
gtgtctattgaacgtaacgaaattgtattagaccgtgatacagaattagacaaagataat
attgaggaaatccttgacattgatgtgaaaactattcttttacacaaagaaagtgcacaa
caaggagattacgcaattatacataatacacttcaaaaggatccaacaaactctgaaaaa
gaagctgtagaacatatttaccgtcaactacgtaatgctgagccgccagatgaggagaca
gcacgtggtattattgacaaattattctttagtgatcaacgttactctcttggagaagtc
ggtcgttatagaatgaacaaaaaactacaattagatatcggaatggataagcaagtgctt
accaaagaagatatcattactataatcaagtatttaattgagcttattaactctaaagct
gagattgatgatattgatcacttatctaaccgtcgtgtacgtacagttggtgagcaatta
tcttctcaatttggtgttggtttagcgcgtatggcacgtactattcgtgaacgtatgaac
gttcgtgataatgaagtgtttactccaattgatttaattaatgctaagacgttatcgtct
gttattaattctttctttggtacaaaccagttatctcaattcatggatcaaaccaatcca
cttgcagaaattacgcacaagcgtcgtttatcagcattaggaccaggtggtttatctaga
gaaagagcaggttttgaggtacgtgatgttcactatacgcactacggaagattatgtcca
attgaaactcctgagggaccaaacattggattaatttcatctttatctgtttacgcgaaa
gtaaactcaatgggattcattgaaacgccatatagaaaagttacagatggtgttgtagat
attaaaagtgaacctatctacttaagtgcagaagaggaagaagataaattaattgctcaa
gcaacggttaaagttgatgagaatggtaagattttacatgataaggtaattgcacgtatg
gaaggtgacttcccagtaatggatccaaaagatattcattatactgatgttgcaccaaat
caaatttcgtctatatcagcgtctttaattcctttcttagaacatgatgatgccaaccgt
gcattgatgggatctaacatgatgcgtcaggccgtaccattattacgtccgcaagcacca
attgttggtacaggattagaaagacaagtagcatcggattctcgtgttttaattaatgca
gaaggagaaggtgttgtacaatatgttgatgctaatgagattgtaattaagtatgaaaga
tcagaagacgatgctaaagttagctttgaaagtgatgttaaatcttatgcattagtaaag
tttagaaaaactaaccaagggacttcgattaacttaacaccaattgttaagaaaggtgat
aaagtaagcaaaggacaagtgttatctgaaggttatgcaactcagaagggtgaattagct
ttaggtagaaacatgaaagtagcctttatgccttggaaagggtataactttgaggatgca
attgtaatctctgagaaagttgttcgtgaggatatctttacttctattcatattgacgaa
tattctcttgatgtaagagatactaaactaggtaacgaagaactaacaaatgatattcct
aatgtttctgaagaggctacaaaagaccttgatgaaaacggaatgattcgtattggtgct
gaagttaaacctggtgatatattaattggtaagattacgcctaaaggggaatctgatcca
actccagaagaaaaattattacgtgctatctttggggacaaagcaggagacgtaaaagat
gcttcattaaaagcatcaccatcattacatggagttgtaattaataaaaaattattttct
agagctgttaaggataaacgtaaaagagctcaagataaagaagatattaataaattagaa
aatctttattatactaagtttgatgatttacaagcggttttagttgaaaaactattcact
attgtaaatggtaaaacatctcaaggtatatttaatgatttaggagaggaagttttacct
aaaggtaaaaaattcactttaaaaatgttaaacgctgttgacgattatacacacttaaca
ggaggtacttggacaacagatgatcatactaacaagttagttgctgatttaattcataat
tacaagattaaagaaaacgacttacaagggtctttaagacgtgagaagtttacaatctct
gtaggggatgaattaccagcaggtatcattaagttggctaaagtttatatcgctaaaaaa
cgtaagttaaaagttggtgataaaatggcaggacgacatggtaacaaaggtattgttgca
cgtatcgtacgtcaagaggatatgccattcttagaagatggaactccggttgatatcgta
ttgaatccattaggtgtaccatcgcgtatgaacattggacagatatatgaaactgtttta
ggatgggctggtcaagatttaggtcgtacgtatgcaacaccaatttttgacggtgctaca
attgatcaaattaatgcattaacagacgaagctggtatccctagatatggacatacttat
ctttatgatggtggaacaggagatcgttttgatcaacctgcaactgttggagttatctac
atgcttaaattagggcatatggttgacgataagatgcacgcacgttctattggaccgtac
tcattaattacgcaacaacctttaggaggtaaagcgcagtttggagggcaacgttttgga
gagatggaagtttgggcacttgaggcttacggagcatctgcaacgttaagagaaatctta
actgtaaaatctgatgacgtggttggtagagctaaaacttacgaagctatcgttaaagga
gaaccaatgccagaacctggattaccagaatctttcaacgtattaatgcacgaattgaaa
gggttaggattagacattagattagaagaataa
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integrated database retrieval system
