Pseudomonas sp. Y39-6: HXW90_26580
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Entry
HXW90_26580 CDS
T11426
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
psyq Pseudomonas sp. Y39-6
Pathway
psyq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psyq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HXW90_26580 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyq03400
]
HXW90_26580 (recB)
Enzymes [BR:
psyq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HXW90_26580 (recB)
DNA repair and recombination proteins [BR:
psyq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HXW90_26580 (recB)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QPO22864
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Position
complement(5892558..5896232)
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AA seq
1224 aa
AA seq
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MSSKPLALAFPLKGSQLIEASAGTGKTFTISALYLRLVLGHGGDDAGFGRELLPPQILVV
TFTDAATKELRERIRIRLAEAARFFRDEIQQPDALIAELRDQYPPAQWPACANRLDIAAQ
WMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRLFCYPMHDDA
LNWVRNNWGGPAALMPRVRALFGSERPSGESREPAELITACLQERRAALVALKAPWPQWA
DELREICLQAVAAKAVDGRKMQARYFEPWFEKISAWAADESLEQLDIGTGFTRLTPDGMA
EAWKGEPPHHPGIDAMASLKASLDALPTPDAAVLQHAAAWVGKRFEDEKRRRAEMGFDDM
LIRLNAALQSDGGERLASVIREQFPVALIDEFQDTDPVQYSIFDSIYRIEENHLDSGLFL
IGDPKQAIYAFRGADIYTYLRARQSTTGRHHTLGTNFRSSHAMVEAVNHVFQRAETGRGA
FLFRKPSGENPVPFQPVLSQGRKEQLQVDGQTLPALNLWHLPTDQPISNAVYRQQLAAAC
ATQIVELLNGGQQGRAGFLHADGSFDGVLPSDIAILVRDGKEAQAVRGELAARGVRSVYL
SDKDSVFAAQEAHDLLAWLKACAEPDVERPLRAALACVTLNLSLPELERLNQDELAWESR
VMQFRGYRAIWRSQGVLPMLRRLLHDFKLPQTLIARSDGERVLTNLLHLSELLQQAASEL
DGEQALIRHLAEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYDLVFLPFICSAK
PVDGSRLPLHYHDANGKSQVSLRPTTELIAQADDERLAEDLRLFYVALTRAKHACWLGIA
DLKRGNNSSSVLHLSALGYLLGAGAALAESAGLARWLLDLQAGCAAVHYAPMPEAHASVF
HPPRNEATLLAPLLPKRKAAENWWIASYSALRIGDSMSAANLEAPESPQAQKLFDDERLD
PDAPREAAASGSDIHRFPRGPNPGTFLHGLLEWAGEDGFDVTPQAIEKAVGARCNRRNWE
GWIITLSGWLGHLLQTPLPLDNDQVTLSGLQHYQIEMEFWFASHKVDVLALDKLVCQYTH
NGVSRVAAEPVLLNGMFKGFIDLTFEHDGRYYVADYKSNWLGPDDSAYTQDAMEQSILEH
RYDLQYVLYLLALHRQLKARLPDYDYDRHVGGALYLFLRGTRAASQGAYFTRPPRALIES
LDLMFQGQSLPPKAEPAWEQGVLL
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaaacccttggccctggccttcccgctcaaaggcagccagctgattgaagcc
agcgccggcaccggcaagaccttcaccatttccgccctgtacctgcgcctggtgctcggc
cacggtggcgatgacgccggcttcggccgcgaactgctgccgccgcagatcctcgtggtg
accttcaccgacgccgccaccaaggaactgcgcgaacgcatccgcatccgcctggccgaa
gccgcgcggttctttcgcgatgagatccaacagcccgacgccctgatcgccgaactgcgc
gatcaatacccgcctgcgcaatggccggcctgtgccaaccgtctggacatcgccgcgcaa
tggatggacgaagccgccgtttcgaccatccacagttggtgccagcgcatgctgcgcgaa
cacgccttcgacagcggcagcctgttcacccagaccctggaaaccgaccacagcgacctg
ctcggcgaagtgctgcgcgactactggcggctgttttgctacccgatgcacgacgatgcg
ctcaactgggtgcgcaacaactggggtggcccggctgcgctgatgccacgggtgcgcgcg
ctgtttggcagcgaacggcccagcggcgaaagccgcgagccggccgagttgatcactgcg
tgcctgcaagaacgccgcgccgccctggtcgccctcaaggcgccgtggccgcaatgggcc
gacgagttgcgcgagatctgcctgcaagccgtcgccgccaaagccgtcgatgggcgcaag
atgcaagcgcgttacttcgaaccctggttcgaaaagatcagtgcctgggccgcggacgaa
tccctcgaacaactggacatcggcaccggcttcacccgcctgaccccggacggcatggcc
gaagcctggaagggcgagccgccgcaccacccgggcatcgacgccatggccagcctcaag
gccagcctggatgcgctgcccacccccgacgccgccgtgttgcaacacgccgccgcgtgg
gtcggcaaacgcttcgaagatgaaaaacgccggcgcgccgaaatgggcttcgacgacatg
ctgatccgcctcaacgccgccctgcaaagcgacggcggcgagcgtctggccagcgtgatc
cgcgaacagttcccggtcgccctgatcgacgagttccaggacaccgacccggtgcaatac
agcatcttcgacagcatctaccgcatcgaagaaaaccacctcgacagcggcctgttcctg
atcggcgaccccaagcaggcgatctacgccttccgtggcgccgacatctacacctacctg
cgcgcgcgccaatccaccaccggccggcatcacaccctgggcaccaacttccgctccagc
cacgcgatggtcgaggcggtcaaccatgtgttccagcgtgcggaaaccgggcgtggcgcg
tttctgttccgtaagccgagtggcgaaaacccggtgccgttccagccggtgctgtcccaa
ggccgcaaggagcaactgcaggtcgatggtcagacgctgcccgcgctgaacctctggcac
ctgcccaccgatcagccgatttccaacgcggtttatcgccagcaactggcggctgcctgc
gccacacagattgtcgaattgctcaatggcgggcagcaaggccgcgctggtttcctacac
gccgacggcagcttcgatggcgtgttgccgtcggacatcgccatcctcgtgcgcgacggc
aaggaagcccaagccgtgcgcggcgagttggccgcccgtggcgtgcgcagcgtgtacctg
tcggacaaggactcggtgttcgccgcccaagaggcgcacgacctgctggcctggctcaag
gcctgtgccgaaccggacgtcgaacgcccgctgcgcgccgcgctggcttgcgtcaccttg
aacctgtcactgccggaacttgagcgtctgaaccaggacgaactggcgtgggaaagccgc
gtgatgcagttccgtggctaccgcgcgatctggcgcagccaaggcgtgctgccgatgctg
cgtcgcctgcttcacgacttcaaactgccgcaaaccctgatcgcccgcagcgatggcgag
cgcgtgctgaccaacctgttgcacctcagcgaactgctgcaacaggcggcctccgaactg
gacggcgaacaggccttgatccgccacctggccgaacacctcgcgctgtcggggcaggcc
ggtgaagaacagatcctgcgcctggaaagcgacgagcaactggtcaaggtggtgaccatc
cacaaatccaagggcctggaatacgacctggtgttcctgcccttcatctgctcggccaaa
ccggtggatggcagccgcttgccgctgcattaccacgatgccaacggcaagtcgcaggtg
agcctgcgcccgaccaccgagttgatcgcccaggccgatgacgagcgcctggcggaagac
ctgcgtctgttctacgtcgccctgacccgcgccaaacatgcgtgctggctgggcattgcc
gacctcaagcgcggcaacaacagcagctcggtgctgcacctgtcggcgctgggctatttg
ctcggtgccggcgccgcgttggcggagtccgccggcctggcgcgctggttgctggacctg
caggcaggctgtgccgccgtgcattacgcgccgatgcccgaagcccacgccagcgttttc
cacccgccgcgtaacgaagccacgctgctcgcgcccttgctgcccaaacgcaaggctgcg
gaaaactggtggatcgcgtcctacagcgccttgcgcatcggcgacagcatgagcgccgcc
aaccttgaagcgccggaaagcccgcaagcccagaagctgttcgacgacgaacgcctcgac
cctgacgcaccacgtgaagcggctgcgtccggcagcgatattcaccgtttcccacgcggc
cctaaccccggcaccttcctccatggcctgctggagtgggcgggcgaagacggcttcgac
gtgaccccgcaggctatcgaaaaggccgtgggcgcgcgctgcaaccgccgcaactgggaa
ggctggatcatcaccctcagcggttggctcggtcatctgctgcaaacaccgctgccgctg
gataacgatcaggtcacgctcagtggcctgcagcactaccagatcgaaatggagttctgg
ttcgccagccataaagtcgacgtgctcgccctcgacaagctggtgtgccagtacacccac
aacggcgtctcccgcgtcgcagcggaaccggtgttgctcaacggcatgttcaagggcttc
atcgacctgaccttcgagcacgacggccgttattacgtggccgactacaaatccaactgg
ctcggccccgatgattcggcctacacccaggacgccatggaacagtcgatccttgagcat
cggtacgacctgcaatacgtgctttacctgctggccctgcatcgccaactcaaggcgcgc
ctgccggattacgactacgaccgccatgtcggcggcgcgctctatctgttcctgcgcggc
actcgggccgccagccagggggcgtacttcacgcggccgccacgggcgctgatcgagagc
ctggacctgatgttccaaggccaatcgttaccgcccaaggctgagcccgcctgggaacaa
ggagtgttgctatga
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