Psychrobacter sp. YP14: DLE54_09685
Help
Entry
DLE54_09685 CDS
T05488
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
psyy
Psychrobacter sp. YP14
Pathway
psyy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psyy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DLE54_09685 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psyy03021
]
DLE54_09685 (rpoB)
03400 DNA repair and recombination proteins [BR:
psyy03400
]
DLE54_09685 (rpoB)
Enzymes [BR:
psyy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DLE54_09685 (rpoB)
Transcription machinery [BR:
psyy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DLE54_09685 (rpoB)
DNA repair and recombination proteins [BR:
psyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DLE54_09685 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
GOLGA2L5
Motif
Other DBs
NCBI-ProteinID:
AWT49749
LinkDB
All DBs
Position
complement(2373683..2377801)
Genome browser
AA seq
1372 aa
AA seq
DB search
MAYSYTEKKRIRKSFAELPHVMDIPYLLAIQVDSYEQFLQENKKPKARENTGLQAAFSSI
FPIESNSNNAELQFVEYYLGAPEFDERECISRGSTFAAPLRVKIRLVIKDKDSKDKNSKA
AIKDIREQNVYMGEIPLMTDNGTFIINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKVLY
NARIIPYRGSWLDFEFDAKDLVFARIDRRRKLLGTIILRALGMDTNEILDTFFEKVSVYK
GEEQFEIDLVADRLRGEMAQFDIVSPDGEVLVEQGKRINARRIRQIEQSGMKKLAVPDEY
LYERILAEDIVVNDEVIAKANTLIDHELLVKLSAFEASESIKEFKILFTNDIDHGAYIAD
TLRADSTGSREEALIEIYKVMRPGEPPTIDTAEKLFESMFFNADRYDLSNVGRMKFNRRL
GREFVNSDDPDVKREQSVLTKEDIIDVLKELINIRNGIGEVDDIDHLGNRRIRSVGEMAE
NQFRVGLVRVERAVKERLSSAESDNLSPQDLINSKPVAAAVKEFFGSSQLSQFMDQNNPL
SEITHKRRISALGPGGLTRERAGFEVRDVHNTHYGRVCPIETPEGPNIGLINSLATFAKT
NEFGFLETPYRKVVDGKVTDDIEYLSAIEEVGTVIAQADSELDENGVLAEEMVMVRSGGE
SVRMPSDKVTHMDVSPSQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVG
TGMERHVARDSGVCVIARRGGVIEDVDASRIVVRVNEDEMQAGEAGIDIYNLIKYTRSNQ
NTCINQRIIVNQGDEIAGGDILADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILLSER
VVKEDRFTTIHIQELTCVARDTKLGTEEITADIPNVGEAALSALDESGIVYIGAEVDAGD
ILVGKVTPKGETQLTPEEKLLRAIFGEKAADVKDTSLRVPTSTKGTVIDVQVFTRDGVEK
DARAKSIEKSQLDNYRKDLKEELRIFEEAARSRISHLLDGQAISGGAGLKSGTVLAESEL
LEMSLETLLDIQPVEEEIAERLTQIQEFLVDKQKDIDTKFAEKKRKLTAGDDLAHGVQKI
VKVYLAVKRRIQPGDKMAGRHGNKGVVSRIMPVEDMPYDENGNPVDIVLNPLGVPSRMNI
GQVLETHLGMAAKGLGDKINGMIKAQAAVTELREFLDKIYNKVGGEQVDLDSLSDDDIRA
LAQNLRDGVPMGTAVFDGAREVQIDELLELAGYPSSGQQTLYDGRTGQKFDRPVTVGYMY
MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGATYTLQEML
TVKSDDVEGRTRMYKNIVDGEQYMDPGMPESFNVLTKEIKSLGINIELKESN
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atggcatattcctatactgaaaaaaaacgtattcgcaaaagttttgccgagttgccacat
gtaatggatattccctatctgttggcaattcaagtggattcctatgagcaatttttgcag
gaaaataaaaagcctaaagcgcgtgagaatacaggcctacaagctgcattttcatctatt
ttcccaatcgaaagtaattcaaacaacgccgaactacaatttgttgagtactacttaggt
gcaccagagttcgatgagcgcgagtgtatttctcgtggttctacttttgcagcaccctta
cgtgtcaaaatccgtctggttatcaaagacaaagatagcaaagacaaaaatagcaaggct
gctattaaagacatccgtgagcaaaatgtatatatgggtgaaatcccattaatgaccgat
aacggtacctttattattaatggtactgagcgtgttatcgtgtcgcaattacaccgttca
cctggtgtgttcttcgaccacgataaaggtaagtcacactcaagtggtaaggtgctttat
aacgcccgtatcattccttaccgtggttcatggttagatttcgagtttgatgctaaagat
ttagtattcgctcgtattgaccgccgtcgtaaattgctaggcactatcattctacgtgct
ctaggcatggacactaatgagatcctagataccttctttgaaaaagtatcggtttataaa
ggcgaagagcaatttgaaattgacctagttgcagatcgcctacgtggtgaaatggctcag
ttcgatatcgtatcaccagacggtgaagtgttggttgagcaaggcaaacgtatcaatgcg
cgccgtattcgtcaaatcgaacagtctggtatgaaaaaactggctgtgcctgatgagtac
ctatatgagcgtattcttgccgaagatatcgttgtcaatgatgaagtgattgcaaaagca
aacaccctaattgaccatgagttattggttaagctaagtgcctttgaagccagtgaatca
atcaaagaattcaagattttattcaccaacgacatcgatcatggtgcgtatatcgctgat
accttacgtgcagacagcaccggtagccgcgaagaagcattaatcgaaatctataaagtg
atgcgtccaggtgagccaccaacgattgatactgctgagaagttgtttgagagcatgttc
ttcaacgccgatcgttacgacttatctaacgttggccgtatgaagttcaaccgccgttta
ggtcgtgagtttgttaatagtgatgatccagatgttaaacgtgagcagagcgtattaacc
aaagaagacatcattgatgtgttaaaagagcttatcaatatccgtaacggtattggtgaa
gtggatgatattgaccacttaggtaaccgtcgtattcgctctgttggtgaaatggctgag
aaccaattccgtgttggtctagtgcgtgttgagcgtgcggtgaaagagcgtttaagctct
gctgaatctgataatttgtcaccacaagatttgatcaactcaaaacctgttgcggctgcg
gtaaaagagttctttggttcaagccagttgtctcagttcatggaccaaaacaacccgcta
tcagagattactcacaagcgtcgtatctcagcattaggcccaggtggtctaactcgtgag
cgtgcaggctttgaggttcgtgacgtacacaatactcactatggtcgtgtgtgtcctatt
gaaacgcctgaaggtccaaacattggtctaatcaactcattagccacctttgctaagacc
aacgaatttggtttcttagaaaccccttatcgtaaagtagtagatggtaaagttactgac
gatatcgagtacctatcagctatcgaagaagtcggcacggttatcgctcaggctgactct
gaattggatgaaaacggcgtactggctgaagagatggtaatggtacgtagcggtggtgaa
tcggtacgtatgccaagtgataaagtgacgcatatggatgtatcacctagtcaggttgtc
tctgttgcagcaagcttaattccattcctagagcatgatgatgctaaccgcgccttgatg
ggttcgaacatgcaacgtcaggctgttcctaccttacgtgctgataagccgttagtaggt
accggtatggagcgtcacgtagctcgcgactcaggtgtgtgtgttatcgctcgccgtggt
ggtgtgattgaagacgttgatgcgtcacgtatcgtggttcgtgttaatgaagatgagatg
caagcgggtgaagcgggtatcgatatctataacttaatcaaatacacccgttctaaccag
aacacctgtattaaccagcgcatcattgttaaccaaggtgacgaaatcgctggtggtgac
atcctagctgatggtccatcaactgacttaggtgagttggctctaggtcagaacatgcgt
gtggcctttatgccatggaacggttataacttcgaagactcgattttattatcagagcgt
gtggtgaaagaagaccgtttcacaaccatccacattcaagaattaacctgtgtggcgcgt
gacacaaaactaggcactgaagaaatcactgccgatattccaaacgtgggtgaagccgcg
ctatctgctcttgatgagtcaggtatcgtttatatcggtgctgaagtagatgcaggcgat
atcttagttggtaaagtaacgccaaaaggtgagacacaattaacgccagaagagaagcta
ctaagagccatcttcggtgaaaaagcagcagacgttaaagacacctctttacgtgtgcca
acctctaccaaaggtacggttatcgatgttcaagtctttacccgtgatggcgtagaaaaa
gatgctcgtgcaaaatcaatcgagaagtcgcagctggacaactaccgcaaagacttaaaa
gaagagctacgtatttttgaagaagccgcacgtagccgtatcagccacttattagatggt
caggccatcagtggtggtgcaggtcttaagtcaggtacagtactggctgagtctgagcta
ctagaaatgtctttagaaacgttattagacattcagcctgttgaagaagaaatcgctgag
cgtttgactcaaattcaagagttcttggtcgataagcaaaaagacatcgataccaagttc
gctgagaaaaaacgcaagctgactgctggtgatgacttagcacacggtgtacaaaaaatc
gttaaggtttacctagcggtgaaacgtcgcatccagccaggtgataagatggccggtcgt
catggtaacaagggtgtggtatctcgcatcatgccggttgaagacatgccttatgatgaa
aacggtaatccagttgatatcgtactaaacccactgggtgtaccttctcgtatgaatatc
ggtcaggtacttgagactcacttaggtatggcagctaaaggtcttggtgacaagattaac
ggcatgatcaaagcgcaagcggcagtcactgagctacgtgaattcttagacaagatttac
aacaaagtaggcggtgaacaagttgatttagacagcttgagcgatgatgatatccgtgca
ttggctcaaaacctacgtgatggtgtgcctatgggtaccgctgtatttgatggcgcccgt
gaggttcaaattgacgagctactagagcttgccggttacccaagctcaggtcagcagact
ttgtatgatggccgtactggtcagaagtttgaccgtcctgtgacggtgggctacatgtac
atgctgaaactaaaccacttagtagatgacaagatgcatgcccgttcgaccggttcatac
tcattagtaacacagcagccattaggcggtaaagcacagtttggtggtcagcgtttcggt
gagatggaagtttgggcactagaagcatatggcgcaacttacacgttgcaagagatgcta
acagtgaaatcggatgatgttgaaggtcgtacgcgtatgtataagaacatcgtcgatggt
gagcagtacatggacccaggcatgcctgaatcgttcaacgtattgaccaaagagattaag
tcactgggtattaatattgagctaaaagaaagcaactag
DBGET
integrated database retrieval system
