Primulina tabacum: 142506227
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Entry
142506227 CDS
T11246
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ptab Primulina tabacum
Pathway
ptab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
142506227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptab03021
]
142506227
Enzymes [BR:
ptab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
142506227
Transcription machinery [BR:
ptab03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
142506227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
DUF7686
Motif
Other DBs
NCBI-GeneID:
142506227
NCBI-ProteinID:
XP_075475527
LinkDB
All DBs
Position
10:complement(5307223..5323641)
Genome browser
AA seq
1718 aa
AA seq
DB search
MAQASEGTTEAVEAVRFGFMTNEEVKKHSVVKITNPDLLDTLEKPIPGGLYDYALGPLHE
DSWCKTCGQRQYNCAGHCGHIDLVSPAYNPLLFNLLQIILNKTCFYCFHFRSAREEVKNC
VSQLKLISEGDIIGAKKFGLTRKLRDKEKYAWILSLCTDEAEDSQGSCASYLSERSGSQN
NYDHHKKPHWDSSMLTESISVLNEFLKKKNKKCKNCQCSNPNISRPTFGWLHLVGLTDNQ
IRSNHILRSRLNVPHDGEEDNKHPSEVVNASDCSGFDDDLETTEANSFVALSDGGEKLSK
SLANHKRSKSMGSEEVPISNLKGPLLPSEVRDTLRRLWDNEAPLCSFICNIQQQREQSEK
TQGHYMFFLETILVPPIKFRPPAKGGDSIMEHPHTLLLGKVLQSNIALGNAHVNNAEHSK
IINRWMELQRSINVLFDSKTASSQGQKDVTSGICQLLEKKDGIFRQKMMGKRVNFACRSV
ISPDPYLAVNEIGIPPYFALRLTYPERVTPWNSAKLRGSVINGPEIHPGATVYVDSVATA
RLPPGNGKARLAISRKLPSSRGAITQSGKSNDLEFEGKIVYRHLQDGDIVLVNRQPTLHK
PSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQY
IVPTRGDTVRGLIQDHIVGAVLLTMKDTFITRSEFSQLLYGSGVFAGGPGILPGKHALKI
SLVASEGLVESVLPTVWKPEPLWTGKQVISALLNHVTRGCAPCTIKNQGKIPKNYFTENN
CKNEEEDEDQNAEHKLLIWKNELVHGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSR
LFTVFLQIHGFTCGLDDLIILPHFDVQRKEKLEGDDVGEEVHCDFVKFKPGQIGTEELQL
EIEKAICADRESATASLDVKMKNKLTNKLTREGSQILKHLLTSGLLKPFPRNCISVMTTT
GAKGSTVNFQQISAYLGQQELEGKRVPRMMSGKTLPSFPPWDFTSRAGGFITDRFLTGLR
PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYG
EDGVDVHQTSFLRNFAALEDNQGPIFQKFQIEREFNAYIEKLPEGLEEEANRYIEMAKKK
SEIGKMNVINKLHKRQKATSNKHLSDKLMTTVKKPDKFIDLVKQKYLSSLAQAGEPVGVI
AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEEIRTPILTCPFLQWRLK
SDVVSLVSNVKKVTVADLLESMEVQLSVDHRKQARIYKLIIKLKDSEFVSLEDTHETLNS
VFIKELDDAIENQVVFLSRILGIKNFKSSSRTDELNEIDGDSGVGTQEKDDDDDDDDGEQ
DAGDDLGSDAQKRKQQATDEMDYEDGSDVEPGEHELLAEQEKRITEDDHLEDEETRKEKE
TEDSANDNEESNVLNEDEVASVAKSNSKSRKMSKLVKTGKLSDKMRRARYAAAEGFSFEV
HFKFTKEPHLLLAQLAQKTAKKVYIKRAGKISQCKMVRYDADEKTVIWDDNKKQKGDPEN
PQTDAEDAAAYWAVKAFGVDFKSFWEMNEDLDTSRLYSNNIHAMLQTYGVEAARATIIRE
VKQVFDIYGVKIDYRHLSLIADYMTHTGGYRPMSRHGSISESLSPFLKMSFETASKFIVE
AASHGLTDDLETPSSRVCLGLPVKMGTGCFDLMQKLEA
NT seq
5157 nt
NT seq
+upstream
nt +downstream
nt
atggctcaagcatctgaggggacgacggaagctgttgaggcagtgagatttggtttcatg
acaaacgaagaagtgaagaagcatagtgttgttaagattactaatccagacctgctcgac
actctcgagaagccaattcccggtggactgtatgattatgccttgggtcctcttcatgaa
gattcttggtgtaaaacatgtggtcagaggcaatataactgtgctggtcattgtggtcac
atcgatcttgtttcaccggcatataatcctttgctgtttaacttgctgcaaattatcctt
aataaaacctgtttttactgctttcatttccggtcagctagagaagaggtgaagaattgt
gtttctcaattgaaactgatttcagagggtgatatcattggggcaaaaaagtttggtttg
acacgaaagttacgagacaaagagaagtatgcttggatcttatcattgtgtacagatgaa
gcagaagatagtcaagggagttgtgcatcatacttatcagaacgctctggtagtcaaaat
aactatgaccatcataagaagcctcattgggattcttctatgctcactgaatctatttct
gtcctgaatgagtttttaaagaaaaagaataagaagtgcaagaattgtcaatgcagtaat
ccaaatatcagtagaccaacttttggatggttgcatctggttggactcactgataaccaa
attcggtccaatcacatactacgtagcagattgaatgtgcctcacgatggggaagaagat
aataagcatccatctgaggtggttaatgctagtgactgctcaggatttgatgatgatctt
gagaccactgaggcaaattcatttgtagctttatctgatggtggtgaaaagctcagtaaa
agtctcgcgaaccataaaagaagtaagagtatgggttctgaagaagtgccaattagtaat
ttaaaagggcctctgttgccatcagaggttagagacactttgcgtcgtttgtgggataac
gaagctcctctttgctcattcatatgtaatattcagcagcaacgtgaacaatctgagaaa
acacaaggtcactacatgtttttcctagagactattcttgtaccccccataaaattccga
cctccggccaaaggtggtgattctataatggagcatcctcatactcttctgttgggtaag
gtactgcagtcaaacattgctttaggaaatgctcatgttaataatgctgaacattcaaag
atcattaatcgctggatggagcttcagcgatctatcaatgtgttatttgatagtaaaact
gcaagcagtcaaggtcaaaaagatgtcacttctggaatttgccagctgctggagaagaaa
gatggtattttccgtcagaagatgatggggaaaagggtcaatttcgcttgccggtctgtt
atatctccagatccttatttggcagtaaatgaaattggaattcctccatattttgctttg
agactaacctatcctgagagggttactccttggaattctgctaaattgaggggttctgtc
attaatggaccagaaatccatcctggagctacagtatatgttgatagtgtagccactgca
aggctgccccctggcaatggaaaagctcgattggcaatatctaggaaattaccttcttca
agaggggcaattacgcaatcggggaagagcaatgaccttgaatttgagggcaagatcgtg
tatcgccatttgcaggatggagatattgtgcttgtgaatcgccagcctactctccacaag
ccaagtattatggctcacgttgttcgcgtattaaaaggagagaaaacgctgcgcatgcat
tatgcaaattgcagctcctacaatgctgattttgatggagatgagattaacgtccatttt
cctcaagatgaaatttctcgtgctgaagcttacaacattgtaaatgctaatgagcagtac
attgttccaactaggggtgatactgtgaggggcttgattcaggatcatatcgttggtgct
gttcttctgacaatgaaggatacatttattacacgtagcgaattcagtcagctgctttat
ggatccggggtgtttgcaggtgggcctggtatacttccaggcaagcatgccttgaaaatt
tctttagtagcttccgagggtctggtggagtctgttttgcccacagtatggaaaccagag
cctctttggacaggaaaacaggtcatttcagcgttgttgaatcatgtaaccagaggctgt
gctccttgtaccattaaaaaccaggggaaaataccaaagaattatttcactgagaataat
tgcaaaaatgaagaggaagatgaagatcaaaacgctgagcacaagttgctaatttggaag
aatgagcttgtgcacggtgtgattgacaaggctcaatttggaaaattcggtctggttcac
acagtgcaagagctttatggatctaacagtgctggcattttgctttctgcattgagtcgc
ttattcacagtctttttgcagattcatggattcacatgtgggctagatgaccttatcata
ttgcctcactttgatgtccaacggaaggagaaacttgaaggagatgatgttggtgaagag
gttcactgtgattttgtgaagttcaaacctggacaaataggcaccgaagaactgcagtta
gaaattgagaaagccatatgtgctgacagagaatctgccacagcatcgttggatgttaaa
atgaaaaataaattgacaaataagctcactagagaaggttctcagatactcaaacattta
cttacatccggattgttaaaacctttcccgaggaactgtatttctgttatgacgacaacc
ggggcaaagggcagtacggtgaatttccaacaaatatctgcctatctagggcaacaggag
ttggaaggtaaaagggttccccgcatgatgtctgggaagactttgccatcatttccaccc
tgggacttcacttctagagcagggggcttcatcactgatcgttttcttactggtcttcga
cctcaagaatattatttccattgcatggctggtcgtgaagggttagttgatactgcagta
aaaacatctcgcagtggatatttacagcggtgcctgataaaaaatcttgagagcctgaaa
gtctgttatgattatactgtccgtgacgctgatggttccatcattcaattctattatgga
gaagatggagttgatgtgcaccagacaagctttctaagaaattttgctgcactagaagat
aatcaagggccgattttccagaagtttcaaattgagcgtgagttcaatgcttacattgaa
aagttgcctgagggccttgaagaagaagccaatcgctatattgaaatggcaaaaaagaaa
tcagaaatagggaagatgaatgtgatcaataaacttcataaaagacaaaaggcaacaagt
aacaagcatctatcagataaactaatgacaactgtaaagaagccagacaagttcatagat
ttggtgaagcaaaagtatctatcaagcctagcacaagcaggagaacctgttggtgtcatt
gctgctcagtctgtaggggaaccatcaacccagatgacgctcaacacatttcatcttgct
ggccgtggtgaaatgaatgttacgcttggtataccacgtctccaggagattttgatgaca
gcatcagaagaaatcaggactcctattttgacgtgcccattcttgcaatggagattgaag
tctgatgtcgtgtctcttgtttccaatgtgaagaaggtcactgtagcagatctgttggag
agtatggaagttcaactatcagtcgatcaccgtaaacaagctagaatctataagctgata
attaaattaaaagattccgagtttgtttctttagaagacacgcacgaaactctcaactct
gtgttcataaaggaattggatgatgcaatagagaatcaagtcgtttttctatcacgaatc
ttaggaattaaaaatttcaagtccagttctagaacagatgagttgaacgaaatcgatggc
gattctggtgttggaacgcaagaaaaggatgatgatgatgatgatgatgatggagaacag
gatgccggagatgaccttggttcagatgcacaaaagagaaagcaacaagctacggatgag
atggattacgaggatggatctgatgttgaacctggagaacatgagttactggcggaacag
gaaaaaagaattaccgaggatgaccatcttgaggatgaagaaaccaggaaagaaaaagaa
actgaagactcggcaaatgacaatgaggagtctaatgtgctaaatgaggatgaagttgcg
tcagtagctaaatcaaatagcaaaagtcgtaaaatgtcaaaactagtgaagacaggaaaa
ttatctgataagatgcgtagggcaagatacgctgctgccgaaggcttctcttttgaagtg
cacttcaaatttaccaaggaacctcatttacttcttgctcagcttgcccaaaaaacggcg
aagaaggtatacatcaagagagctggcaagatcagtcagtgtaaaatggtacgatacgat
gcagatgaaaaaacggtcatttgggatgataataaaaaacaaaagggtgatcctgaaaac
ccacaaactgatgcagaggatgctgccgcctattgggcagtaaaggcattcggagttgat
ttcaaatctttctgggaaatgaatgaagaccttgatacgagccgtctatattccaacaat
atccatgccatgttgcagacatatggagtagaagctgccagagccaccattataagagag
gtgaagcaagttttcgatatttatggagtaaagattgattataggcatttaagcttgata
gcggactacatgacgcacactggtggataccggccgatgagcagacacggaagcatttcc
gagtctttgtcgccgtttcttaagatgtcatttgagacggcatctaagtttattgttgaa
gcagcatctcacgggctaacagatgacttggagacgccgtcttctagagtttgtctgggc
ttacctgtgaagatggggactggttgttttgacttgatgcaaaaattggaagcttga
DBGET
integrated database retrieval system
