Primulina tabacum: 142518020
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Entry
142518020 CDS
T11246
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
ptab Primulina tabacum
Pathway
ptab03040
Spliceosome
ptab04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142518020
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
142518020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptab03041
]
142518020
04121 Ubiquitin system [BR:
ptab04121
]
142518020
03400 DNA repair and recombination proteins [BR:
ptab03400
]
142518020
Enzymes [BR:
ptab01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
142518020
Spliceosome [BR:
ptab03041
]
Complex B
Other components
Prp19 complex
142518020
Complex C
Prp19-CDC5 complex
142518020
Ubiquitin system [BR:
ptab04121
]
Ubiquitin ligases (E3)
U-box type E3
142518020
DNA repair and recombination proteins [BR:
ptab03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
142518020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_WDR41
Beta-prop_WDR19_1st
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_DCAF4
U-box
Beta-prop_DCAF12
KNTC1_N
PAS_11
zf-Nse
PUMA_CC
V_ATPase_I_N
DUF1635
Motif
Other DBs
NCBI-GeneID:
142518020
NCBI-ProteinID:
XP_075476710
LinkDB
All DBs
Position
11:5213530..5222272
Genome browser
AA seq
525 aa
AA seq
DB search
MNCSISGEVPEEPVVTKNSGLLFEKRLIERHILDYGKCPITGESLTMEDIVPIKTGKIVK
PRPVQAASIPGMLGMFQIEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLAQAERQIPLSFAAPNAANDAPLSNGKRAAEEDDMSPDGKRMRPGISSSIIS
ELTDCNAALSQQRKKRQIPSTLAPVDALEKFTQLNSHPLHRTNKPGILSLDIQYSKDIIV
TAGVDSNAVVFDRPSGQIVSTLSGHSKKVTNVKFATEAEFIVTGSADKTVRVWQGSENGN
YDCRHILKDHTAEVQAVTIHATNNYFVTASLDSTWCFYDLASGLCLTQVEDASGSSEGYT
SAAFHPDGLILGTGTTGAIVKIWDVKSQANVARFDGHIGAVTSISFSENGYFLATAAQDG
VKLWDLRKLRNFRTFSPYEENTPTQSVEFDHSGNYLAIGGSDIRVYQVANVKSEWNCIKT
FPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRIFGLPEEDGPSES
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgaattgttccatttccggagaggttccagaggaacctgtcgtcacgaagaattcaggt
cttctcttcgagaaacgcttaatcgagcgccacatcttggattatggaaaatgtccaatt
actggagaatccctgacaatggaagatattgttccaatcaagactgggaagatagtgaag
cccagaccagtgcaagctgcaagcattcctggaatgctgggaatgtttcagatcgaatgg
gatggcttgatgctatcaaattttgcgctggagcaacaattacatactgcaaggcaagag
ctaagtcatgcattatatcagcatgatgcagcatgtcgtgttattgcaagattgaagaag
gaaagggatgaggctaggtcattactggcacaggctgaaagacagattcccttatcattt
gctgctccaaatgcagcaaatgatgctccattaagcaatgggaaaagagctgctgaggaa
gatgatatgagcccagatgggaaaagaatgcgtccaggaatctcgagtagtattatttcc
gagcttacagactgtaatgctgctctttcacaacaaaggaaaaagcgccagataccttcg
acattggctcctgttgatgctttggagaagttcactcaacttaacagtcaccctcttcat
cgaactaataaacctggcatattgtctttggatattcagtattccaaggacatcattgtc
actgctggggtggattcaaatgctgtagtctttgataggccctcaggacagatagtatcg
actctcagtggtcattcaaaaaaggtcacaaatgtcaaatttgctactgaggctgaattc
atagttactggctctgctgataagacagttcgagtgtggcaaggatctgaaaatggaaac
tatgattgtaggcatattttgaaggatcatactgctgaggtgcaagctgttacaattcat
gccaccaataactactttgttacggcttctcttgatagcacgtggtgcttctatgatcta
gcttctggtttatgccttactcaggttgaggacgcttctggatcttctgaaggctacaca
tctgcagcttttcacccagatggtctcatccttggaactggtaccactggggctattgtt
aagatttgggatgtgaagagtcaggcgaatgttgcgagatttgatgggcatattggagca
gtgacttccatttcattttcagaaaatggttacttccttgcgactgctgctcaagatggt
gttaagttgtgggatctacgaaaattgaggaactttaggactttctctccatatgaggag
aatacacctacacaatcagtggaatttgatcatagtggaaattaccttgcaataggagga
tcggacattagagtttatcaagttgccaatgtcaaatctgaatggaattgtatcaagaca
ttccctgatttgtcaggcacaggcaaagcaacatgcgtaaaatttggccctgatgcaaaa
tacatcgctgttggctctatggatagaaatctcagaatatttggacttcccgaggaggat
ggtccatcagaatcttga
DBGET
integrated database retrieval system
