Primulina tabacum: 142530935
Help
Entry
142530935 CDS
T11246
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC142530935
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ptab Primulina tabacum
Pathway
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142530935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142530935
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142530935
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
142530935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
142530935
NCBI-ProteinID:
XP_075492985
LinkDB
All DBs
Position
17:complement(25477382..25507768)
Genome browser
AA seq
2421 aa
AA seq
DB search
MIPLSSKLSSQIRFLIQSLDDSDSGSDFESIFLELCECTSHGTEGSILLLQICLDNLHVY
VKDLKNMQMHPLFASLFKHIMDKPNFSTVLCQSLSTAATNGEYLQNLSNVLHLSPLEKIG
MGLALSDSENLEIRMCGKNFCMSQIAEFSANPMASDSSELIQKILVFLSQSEGLSKYVDS
FMQMLSLLQLKEESQFILAPFLSDELRDEKFFRHLDLFNEGDEDNFDTILEEMEKESSMA
DMMNELGYGCTANFSQCKEMLSLFLPLSDVTIAKILGTIARTYAGLDDSQNVFTTFFSAL
GGNIGLEQPSLNSWNVDVLVDSIKQLAPGINWINVMEKLDHENFYIPNETAFSFFMSVFK
YACQDPFPLHAICGFIWKNVEGQLSFLKYAISMPPEVFTFAHSERQMAYDDVVTGHKFQS
GQLNHAWTCHDLLEVLCQLAERGHANFVRSAIKNPLNHCPEILLLGMARVNTAYNLIQHE
VSSAVLPMVLKNVSGNSLILHLWHEHPNMLLRGFIDAMNIDPDNYTRILDACQELKILLP
VLDMIPSYFGIRLTALASRKEFMDLENWLSNKLVAYKDAFYEECLKFLKEVQLGAQDVSS
DRFHPIGALVNIYLEAYPSFLKVLRSHVGVTSSSHLAEEMEKLHATSMRGNALLKDGGTA
DSTSPDSYADDIEKEANSYFHQMFSGLLAIDTMIQMLTRFKESPDRREQLIFECMIANLF
EEYKFFSKYPERQLKIAAGLFGSLIKHQLVTHLTLGIALRAVLDALRKPADSKMFVFGTK
ALEQFVDRLIEWPQYCNHILQISHLRVTNVDLVTLIERALARISAAHTDQDIVHDATELH
HGSIQPSSTNVETPSSSFLLSGLGSSQTGPPVALTVQLPQRSTSSLEERKPPVAPCNYLK
PAQLAAGQATGAPSSDTASIQKSQSSVGASTHASSPGFPRSSRATSARFGSALNIETLIT
AAERREIPIETPASEIQDKISFIINNLSAANIEAKAKEFTEILNEHYYPWFARYMVMKRA
SIEPNFHDLYLKFLDKVNLKSLNKEVIQATYENCKVLLGSELIKSSSEERSLMKNLGSWL
GKITIGKNQVLRAREIDPKSLIVEAYEKGLMIAVIPFTSKILEPCSNSLAYQPPNPWTMG
ILGLLVEIYAMPNLKINLKFDIEVLFKNLGVDLKEVTPTSLLKDKIREVEGNPDFSNKEV
GSSQPQMVNEVKSGIIPTLNQVEQLLDVTPPLPGTHSHIISQYVAPLHTTSGSLADDEKL
TSPGVTDQLSSAQCLPQVQSKFSVNQIPVPASNMEQQVIINKKLHALGLFLNFQSVLPIS
MDRAITEIVSSIVQRSVSIATQTTKELVLKDYALEHDETLIRNAAHLMVARLAGSLAHVT
CKEPLRGSISSQLRGLLQGLSISSELLEQAIQLVTNDNLDLGCAVIEQAATEKAIQTIDG
EIAQQLTIRRKHREGAGLTYFDSSMYAQGQTGVLPDALRPKPGRLSHSQQRVYEDFARLP
WQNWSSQGSNAVPTVPITSSGSGAFSRQFASTSDQITTGIYTSGIANAGISSIPKHLKIG
YEELDANASHLPSVSSTHIATVDTPTLRSLENDVSTFPLTSTPELHLTGPSNYLKEPESS
MQSVIPTLASDHLGSNVLEPLLTTGDALDKYQTISEKLENLLISDAKEAEIQGVIAEVPA
VVLRCIIRDEAALAVAQEAFKGLYEKAANRAHVSAHLAILAAIRDVSNLVVKELTSWVMY
SDEDRKFNKDITVGLIGSELLNLAEYNVYMAKLIDTGRNKAATEFAISLIQTIVVNDSKV
ISELHNLVDALAKLAARPGSPESLQQLVEIAKNPTANPTTLPTVIVGKEDNMRSSKDKKA
AGLPGPCNEDYSATESVEPDPAGLHEQVSMLFAEWYQICELPGANDTACACYVLHLQQRG
LLNXAMIPQSIFFRRLTELSVSHCLSSEVINSSSSQSRVGQPLSFLAIDIYAKLVFSILK
FFPVEQGPSKLSLLLKILAVTVKFIQKDAAEKTSSFNARPYFRLFINWLLDLCSLDPVFD
GTNFQVLTALANAFHALQPLKIPGFSFAWLELVSHRSFMPKLLMVNAQKGWPYFHRLLVD
LFQFMEPFLRLADLGESIQFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRN
IILSAFPRNMRLPDPSTPNLKIDLLAEISHTPRILSEVDAALKAKQIKNDVDEYLKTRQQ
GSSFLTELKQKILLTPSEGARSGSRYNVPLMNSLVLYVGVQAIHQPQARVSPYPQSMASM
TAFLVSAALDIFLTLILDLDSEGRYLFLNAIGNQLRYPNNHTHYFSFILLYLFNESNQEN
IQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRSFTRCAPEIEKLFESVSRS
CGGPKSVDESVISGGIPDNMH
NT seq
7266 nt
NT seq
+upstream
nt +downstream
nt
atgattccgctgtcatcgaaattgtctagtcaaatccggtttctcatccagagcttggat
gactccgattcgggctccgacttcgaatcgattttcctggagctttgcgagtgtacttca
catggaactgaaggaagcatattgctactccaaatctgtttggataacttgcatgtttat
gtgaaagatttgaagaatatgcagatgcatccactatttgcttcattgtttaaacatatt
atggataaacctaatttcagtacagttttgtgtcaatcattgagtactgcagctacaaat
ggagaatatttgcagaatctttctaatgtgttgcacttatcaccattagagaaaattgga
atgggccttgctttatctgattcagaaaaccttgagatcagaatgtgcgggaaaaacttt
tgcatgagtcagattgcagaatttagtgccaatcccatggcttcagattcttctgagcta
attcagaaaattctggtgtttcttagtcaatctgaaggtctatctaagtatgtggattca
ttcatgcagatgttatctcttctgcaattgaaggaggaatcccaatttatcttagcacct
ttcctttctgatgaattgcgtgacgaaaaattcttcaggcatttggatttattcaacgaa
ggtgatgaagataattttgataccattctagaagaaatggagaaggaaagtagcatggct
gatatgatgaatgaattaggctatggatgcactgccaatttctcacaatgcaaagaaatg
ttgtctttattcttgcccctttctgatgtcaccattgcaaagatacttggcacaattgcc
cgaacttatgcaggtcttgatgacagtcaaaatgtgttcaccacatttttttctgcgctt
ggtggtaatattggtttggagcaaccgtctttgaactcctggaatgtagatgtactagtg
gattcaataaagcagctcgctcctggaattaactggataaatgtcatggagaagctggac
cacgaaaatttttatatccctaatgagacagcattttccttttttatgtcggtgtttaaa
tatgcatgtcaggatccatttcctcttcatgcaatttgcggctttatttggaagaatgtt
gagggtcagctatcattcttaaagtacgccatctcaatgccacccgaggtgtttacattt
gctcattctgagaggcaaatggcctacgatgatgttgtgacagggcataagtttcaatct
ggccagttaaatcatgcttggacctgccacgacctcctcgaggtgttatgtcaactagct
gagaggggccatgcaaattttgtgcgatctgctattaagaatcctcttaatcactgccct
gaaattttgcttcttgggatggctcgcgtgaatacggcatataatcttatccagcatgaa
gtgtcttctgctgttcttcctatggtactcaaaaatgtttcaggaaacagtttaatactt
catctatggcatgaacacccaaacatgttgttgcgaggattcatagatgccatgaacatt
gatcctgacaactatactaggattctggatgcttgccaggaattaaagatcctattgccg
gtattggatatgattccttcttattttggaattcgacttactgcccttgcttctaggaaa
gaattcatggatcttgagaactggttgagcaataaattagttgcatacaaagatgctttc
tatgaggagtgtctcaagtttctgaaggaggttcagcttggagctcaggatgtttcttct
gatcgctttcaccccattggtgctcttgtgaatatttatttggaagcatatccctctttc
ttaaaggtccttcggtctcatgttggtgtcacttcgtccagtcatttggccgaggaaatg
gaaaaattgcatgccacttccatgcgtggtaatgcactacttaaagatggtgggactgct
gactccacctctcctgatagttacgctgatgatatcgagaaagaagcaaattcatacttc
catcaaatgttttcgggtctacttgctattgatacgatgattcaaatgcttactcgtttc
aaggaatctccggacagaagagagcagttgatttttgagtgcatgattgctaatctgttc
gaggagtacaagttcttttccaagtaccctgaaaggcagttgaaaattgccgcaggtctc
tttgggtcactcatcaaacatcaacttgtgacgcatctcaccctcggtatcgctttgcga
gctgttttagatgctctgcggaaacctgccgattcaaaaatgtttgtttttgggactaag
gcactggaacaatttgttgaccgcctcatagagtggccgcagtactgcaatcatattctg
caaatatctcatttgcgtgttacaaatgtggaccttgttacattgattgagagggcactc
gctaggatttcagcagctcatactgatcaagacattgtccatgacgctactgagcttcat
catggttctatccagccatcttctactaatgtggagactccgagctcgtcttttttgtta
tctggactggggagctcacagactgggccgccagtcgcccttactgtccaacttccccaa
agatctactagttctttagaagagagaaaaccccctgtggcgccatgtaattacctaaag
ccagcacaattagcagcagggcaggctactggtgctccttcaagtgatacagctagcatt
cagaagtctcagagttctgttggtgcatcaacgcatgcttcctctcctggttttccacgt
tcatctcgagctacctcagcaaggtttggctctgccttaaacattgaaactcttatcact
gcagccgaaagaagagagattccaatagagacacctgcttctgaaattcaggataagata
tcttttatcattaataatttgtctgctgccaatattgaggctaaagctaaagaatttact
gagattctgaatgagcactattatccctggtttgctcggtatatggtcatgaagagagca
agcattgagccaaattttcatgatctgtacttaaagttccttgataaagtaaacctgaag
tctttgaacaaagaggttatacaagccacttatgagaactgcaaggtacttctagggtca
gaactcataaagtcaagttcggaagagcgttcattgatgaaaaatttaggaagctggctt
gggaagattactatcgggaaaaatcaagttttaagggcacgggagattgatccgaaatct
ctgattgtggaggcgtatgagaagggacttatgattgctgtcattccttttacatccaag
attctagaaccatgttctaacagtcttgcttatcaacctccaaacccttggacaatgggt
atacttggattgcttgttgagatttatgcaatgcctaatttaaaaataaatctcaagttt
gatatagaggtcctgttcaagaaccttggtgtagatttaaaagaagtaacacctacttct
cttctcaaagacaaaattcgagaagttgaaggtaatcctgatttttccaataaagaagta
ggatcttcacaacctcaaatggtaaatgaggtgaagtctggaataatacctacactaaac
caagttgagcaactgcttgatgttactccacctcttccgggtactcattcacatatcata
tctcagtatgtggctccccttcataccacatctggctcattggctgacgatgagaagttg
acaagtccgggagtaacagatcagctttcttctgctcaatgtcttccccaagtacagtcc
aagttttccgttaaccagattcctgtgccagcctctaatatggaacagcaagttattatc
aataaaaagctccatgcattgggcctgttcttgaatttccagagtgtacttccaatttcc
atggatcgagctatcacagagatagtgtccagcattgtgcagcgaagtgtttctattgca
actcagacaacaaaggaacttgttttgaaggactatgctttggagcatgatgaaaccctc
atacgtaacgcagcacatttgatggtggcaagattggctgggagtctagcacatgtgaca
tgcaaggaacctttgcgtggttcaatatcaagccagcttaggggtttgcttcagggcttg
agcatatcgagtgaacttttagagcaagcaattcaacttgtgaccaatgacaatctggac
ctcggctgtgcggtgattgaacaagctgccacagaaaaggcaattcaaactattgatggg
gaaattgcccagcaacttactatcaggaggaaacatagagagggtgctggtctcacatat
tttgactctagcatgtatgcccaaggtcaaacgggtgttttaccggatgcccttcgccca
aaacctggacgcctgtcacattcgcagcagcgtgtttatgaggattttgcacggttgccg
tggcagaattggtccagtcagggttcaaatgctgtacctactgttcccattacttcatct
ggcagtggggctttctctcggcaatttgcatccacatctgaccaaataactactggcatt
tatacatctggcattgcaaatgcgggaattagctccattcccaagcatctgaaaattggt
tatgaggagttagatgccaatgcatcccatcttcctagtgtttcttccacacatattgcg
actgttgatactcctactctgcgaagtcttgaaaatgatgtttctactttccccctcact
tctacacctgaattgcatttgacaggaccttcgaattatttaaaagaaccagagtcttcg
atgcagtctgttatcccaactttggcatcagaccatcttggaagcaatgttttggagcct
ttgttaaccacaggtgatgcactggataagtaccagactatttcagagaagcttgaaaat
ctattgattagtgatgccaaggaagcagaaatccagggagttatagctgaggttcctgct
gtcgtcctcaggtgcataatccgagatgaggctgctctggcagttgctcaagaggctttc
aagggcttgtatgaaaaggcagcaaaccgagctcatgtcagtgctcacctagcaatcttg
gctgccattcgtgatgttagcaatcttgttgttaaggagctcactagttgggtaatgtac
tcagatgaggaccggaagttcaataaggatatcactgttggtcttattggcagtgaacta
ttaaatcttgctgagtacaacgtctatatggcaaagctaattgatacaggaagaaataag
gctgccacggaatttgccatttctcttatccaaacaatagttgtcaatgattctaaagtg
atatcagaactacacaatcttgttgatgctctggcaaagcttgctgcaaggcctggatct
cccgagtcactgcaacagctagttgagattgctaagaaccctactgcaaatcctacgacc
ttgcctactgtaattgttgggaaggaagacaatatgagatcatctaaagacaaaaaggcc
gctgggctacctgggccatgcaacgaagactactcggccacagaatccgtggaaccagat
cccgctggtctgcatgagcaggtctccatgctgtttgcagagtggtaccaaatatgtgag
cttcctggagcgaatgatacagcttgcgcttgttatgtcttacacttacagcagaggggc
ctgcttaacntggcgatgatacctcagagcatttttttccgccggctcacggaactttca
gtgtcacactgcttatcttctgaggtgatcaattctagctcttcccagtcacgtgtggga
caacctttgtcattccttgctattgacatctatgcgaaattggtcttctcaattctgaag
tttttccctgttgagcaagggcctagtaaactctctcttttgcttaagattcttgctgtc
accgtgaagtttattcaaaaagatgctgcagagaagacatcctcgtttaatgccaggcca
tattttaggttgtttattaactggttgttggatttgtgttccttggacccagtttttgat
ggcacaaatttccaggttttgactgctttagcaaatgctttccatgctcttcagcctctc
aagattccagggttcagctttgcttggctcgagttagtgagtcatagaagtttcatgcca
aaattactcatggtaaatgcacagaagggatggccttattttcatagacttcttgtagac
ttgttccagttcatggagccattcctgagacttgctgacctgggagagtcgatacaattt
ctttataaagggacactcagggtcttgttggtgctactccatgatttcccggagttcctt
tgtgattatcatttcagcttctgtgatgtcattccaccaagttgcatacagatgcgaaat
ataatcctaagtgcattccctcgcaatatgaggttgccggatccatctacccccaaccta
aagattgacctactggcggaaatcagtcacacaccacgaattctctctgaggttgatgca
gctcttaaagcaaagcagatcaagaatgatgtggatgagtatctcaagacaaggcagcaa
gggtcttcatttcttactgagttgaagcagaagattttgcttactccgtctgaaggagct
cggtctgggagtcgttacaatgttcctctcatgaactctcttgtcctttatgttggggtg
caggccatccatcagccgcaagccagagtttcaccatacccgcagtccatggctagcatg
actgctttcttggttagtgctgctcttgacattttcctgacattgatacttgatctggac
tcagagggccgttacctgttcttgaatgctatcgggaaccagttacgctatccaaacaac
cacactcattacttctctttcatccttctttacctgtttaacgaatcaaatcaggaaaat
attcaggagcaaatcacccgggtcctacttgaacgactaattgttaataggcctcatcct
tggggacttctaatcacgtttattgagctcatcaagaatccccgatacaatttctggagc
cggtcttttacaaggtgcgcgcctgagattgagaagctttttgaatcggtatcaagatca
tgtgggggtccaaagtcagtcgacgagagtgtaatttcgggtggcatacctgataatatg
cactaa
DBGET
integrated database retrieval system
