Primulina tabacum: 142539437
Help
Entry
142539437 CDS
T11246
Name
(RefSeq) uncharacterized protein LOC142539437 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ptab Primulina tabacum
Pathway
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142539437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142539437
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142539437
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
142539437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
142539437
NCBI-ProteinID:
XP_075501007
LinkDB
All DBs
Position
3:complement(4253886..4274080)
Genome browser
AA seq
2449 aa
AA seq
DB search
MIHLSTKLSGHIRFLIQSLDDSDSGSDFESIFLELCECTSHGIEGSILLLQICLDHLHIY
QKDSKNMEMHPIFASLFKHIMDKPNFSTVFCQSLSTASINGEYLQNLSNGLHLSALDKIG
MGLALSDSENLETRMCGKNFCMSQIAELSANPMASDSSELIQQILVFLSQSEGLSKYVDS
FMQMLSLVQLEEGAQFILAPFLSDELRDENFFRHLDLLNEGDEDDFDAILAEMEKESSMA
DMMNELGYGCTANVSQCKEMLSLFLPLSDVTIAKILGTIARTYAGLDDSQNVFSTFCSAL
GVSIGLEQPSLNSWNVDVLVDSIKQLAPGINWINVTEKLDHENFYIPNETAFSFFMSVYK
YACQDPFPLHAICGFIWKNVEGQLSFLKYAISMPPEVFTFAHSERQMAYDDVVTGHKFQS
GQFNHAWTCHDLLEVLCQLAERGHANFVRSAIKNPLNHCPEVLLLGMARVNTAYNLIQHE
VSSAVLPMVLKNVSGNSLILHLWHDNPNLLLRGFVDATNIDPDNYSRILDACQELKILSP
VLDLIPSYFGIRLATLASRKEFMDLENWLDDKLVAYKDAFYEECLKFLKEVQLGAQDVSS
NRFHPTGALVNTYLDAYPSFVKVLRSHVGVISSSHLSEEMEKLHSTSMRGNTRLKEGGTA
DSTSSDSYADDIEKEANSYFHQMFSGLLAIDAIIQMLTRFKESPERREQLIFECMIANLF
EEYKFFSKYPERQLKIAAGLFGSLIKHQLVTHLTLGIALRAVLDALRKPADSKMFVFGTK
ALEQFVDRLIEWPQYCNHILQISHLRVTNADLVTFIERALARISAAHTDQDIVNNDTTDL
HHGPIQPSSTNVETPSSSFLLSGLGSSQTGTSVVPTVQLPQRSTSSLDERKLPVALSNYL
KPAQSTAGQPAVAPSSDAAGIQKSQSSLGALTHASSPGFPRSSRSTSARFGSALNIETLI
TAAERREIPIETPASEIQDKISFIINNLSAANIEAKAKEFTEILSERYYPWFAQYMVMKR
ASIEPNFHDLYLKFLDKVNLKSLNKEVVQATYENCKVLLGSELIKSSSEERSLLKNLGSW
LGKITIGKNQVLRAREIDPKSLIVEAYEKGLMIAVIPFTSKILEPCSNSLAYQPPNPWTM
GILGLLVEIYAMPNLKINLKFDIEVLFKNLGVDLKEVTPTSLLKDKIREVEGNPDFSNKE
VGSSQPQMLNEVKSGIIPTLNQVEQPLDVASPHPGAHSHIISQYAAPLHTLSGTLADDEK
LTSPGVSDQLFSAQGLPQGQSQFSVNQIPAPASNMEQQVVINKKLHALGLYLNFQSVLPI
AMDRAITEIVSSIVQRSVSIATQTTKELVLKDYALEPDETLIRNAAHLMVARLAGSLAHV
TCKEPLRGSISSQLRGLLQGLSISNELLEQAIQLVTNDNLDLGCAVIEQAATEKAIQTID
GEIAQQLTIRRKHREGAGLTYFDSSLYAQGQMGVLPDALRPKPGRLSHSQQRVYEDFARL
PWQNWSSQGSNAAPVVPIASSGSGGLSRQFASTSDQITAGIYTSGIANAGISVIPHNLKI
GYEELDANASHLPSVSSTHIATVDTPAPQSLENDVSSFPLASTPELHLTGPSNYLKEPVA
SVQSVIPTVASDRLGSNVLEPLLTTGDALDKYQTISEKLENLVSSDAKEAEIEGVIAEVP
AVILRCISRDEAALAVAQKAFKGLYEKAANRAYVSAHLAILAAIRDVSKLVVKELTSWVM
YSDEDRKFSKDITVGLIGSELLNLAEYNVYMAKLIDAGRNKAATEFAISLIQTLVVNDSK
VISELHNLVDALAKLAARPGSPESLQQLVEIAKNPIANLTTLPTVIVGKEDNMRSSKDKK
VFEVVFSLLLTFNNQYLSVYIKFYVLKQVSGLPGSSREDYSATELVEPDPAGLHEQVSML
FAEWYQICELPGANDAACARYVIHLQQRGLLNGDDTSEHFFRRLTELSVSHCLSSEVINS
SSSQSHLGQPLSFLAIDIYAKLVFSILKFFPVDHGPSKLSLLLKILAVTVKFIQKDAAEK
TSLFNPRPYFRLFINWLLDLCSLDPVFDGTNFQVLTALANAFHALQPLKIPGFSFAWLEL
VSHRSFMPKLLTVNAQKGWPYFQRLLVDLFQFMEPFLRLADLGEPIQFLYKGTLRVLLVL
LHDFPEFLCDYHFSFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLAEISHTP
RILSEVDAALKAKQIKNDVDEYLKTRQQGSSFLTELKQKLLLTPSEGARSGSRYNVPLMN
ALVLYVGMQAIQQLQSRVPPYTQSMASMTAFLVSAALDIFQTLILDLDSEGRYLFLNAIG
NQLRYPNNHTHYFSFILLYLFNESNQEVFQEQITRVLLERLIVNRPHPWGLLITFIELIK
NPRYNFWSRSFTRCAPEIEKLFESVSRSCGGPKPVDDSVVSGGLPDNMH
NT seq
7350 nt
NT seq
+upstream
nt +downstream
nt
atgattcatctgtcaacgaaattgtccggtcatattcggtttctcatccagagtttggat
gactccgactcgggctccgacttcgaatcaattttcctagagctttgcgagtgtacttca
catggaatcgaaggaagcatattgctactccaaatctgtttggatcacttgcatatttat
cagaaagattcgaagaatatggagatgcatccaatatttgcttcattgtttaaacatatt
atggataaacctaatttcagtacagtcttctgtcaatcattgagtactgcaagtataaac
ggggaatatcttcagaatctttctaacggactgcacttgtcggcattagataaaattgga
atgggccttgctttgtctgattcagaaaaccttgagaccagaatgtgcgggaaaaacttt
tgcatgagtcagattgcagaattgagtgccaatcccatggcttcagattcttctgagcta
attcagcaaattctggtgtttctcagtcaatccgaaggtctatctaagtatgtcgattcg
ttcatgcaaatgttatctcttgtgcagttggaggagggagcccaatttatcttagcccct
ttcctttctgatgaattgcgtgacgaaaatttcttcaggcatttggatttattaaacgaa
ggtgatgaagatgattttgatgccattctagcagaaatggagaaggaaagtagcatggct
gatatgatgaacgaattaggctatggatgcactgccaatgtctcacaatgcaaagaaatg
ttgtctttattcttgcctctttctgatgtcactattgcgaagatacttggtaccattgcc
cgaacttacgcaggtcttgatgacagtcaaaatgtgttttctacattttgttccgcgctt
ggggttagtattggtttggagcaaccgtctctgaactcttggaatgtagatgtactagtg
gattcaataaagcagctcgctcctggaattaactggataaatgtcacggagaagctggat
cacgagaatttttatatccctaatgagacagcattttccttttttatgtctgtgtataaa
tatgcatgccaggatccatttcctcttcatgccatttgtggctttatttggaagaatgtc
gagggtcagctatcattcctaaagtatgccatctcaatgccacctgaagtgtttacattt
gcacattctgagaggcaaatggcctacgatgatgttgtgacagggcataagtttcaatct
ggtcagttcaatcatgcttggacctgccacgacctcctcgaggtgttatgccaattagct
gagaggggccatgcaaattttgtgcgatctgctattaaaaatcctcttaaccactgccct
gaagttttgcttcttgggatggctcgtgtgaatacggcatataatcttatccagcatgaa
gtgtcttctgctgttcttcctatggtactcaaaaatgtttcgggaaacagtttaatactt
catctgtggcatgacaacccaaacttgttgttgcgaggattcgtagatgccacaaacatt
gatcctgacaactatagtaggattctggatgcttgccaggaattaaagatcctatctccg
gtattggatttgattccttcttattttggaattcgactggctacccttgcttctagaaaa
gaattcatggatcttgagaactggttggacgataaattagttgcatacaaagatgctttc
tatgaggagtgcctcaagtttctaaaggaggttcagcttggagctcaggatgtttcttct
aatcgctttcaccccactggcgctcttgtgaatacttatttggatgcttatccctctttc
gtaaaggtccttcggtctcatgttggtgtcatttcgtccagtcatttgtccgaggaaatg
gaaaaattgcattccacttccatgcgcggtaatacacgactcaaagagggtgggactgct
gactctacctcttctgatagttatgctgatgatattgagaaagaagcaaattcatatttc
catcaaatgttttcgggtctactggcaattgatgcgattattcaaatgcttactcgtttc
aaggaatctccggagagaagggaacaattgatttttgagtgcatgattgctaatctattc
gaggagtacaagttcttttccaagtaccctgaaaggcagttgaaaattgccgctggtctt
tttgggtcactcatcaagcatcaacttgtgacacatctcacactcggtatcgctttacga
gctgttttagatgctctgcggaaacctgcagattcaaaaatgtttgtttttgggaccaag
gcactggaacagtttgttgaccgcctcatagagtggccacagtactgcaatcatattcta
caaatatctcatttgcgtgttacgaatgcggaccttgttacctttattgagagggcactc
gctaggatttcagcagctcatactgatcaagacattgtcaataatgacactactgatctt
catcatggtcctatccagccatcttctactaatgtggagactccgagctcgtcttttttg
ttatctggactgggaagttcacagactgggacgtcagtcgtccctacagtccaacttccc
caaagatctacaagctctttagatgagagaaaacttcctgtggcgctgtctaattaccta
aagccagcacaatcaaccgccgggcagcctgctgttgctccttcaagtgatgcagctggc
attcaaaagtctcagagttctctcggtgcattaacgcatgcttcctctcctggttttcca
cgttcatctcgatctacctcagcaaggtttggctctgccttaaacattgaaactcttatc
acagcagcagagagaagagaaattccaatagagactcctgcttctgaaattcaggataag
atatcttttatcataaataacttgtctgctgccaatattgaggctaaagctaaagaattt
actgagattctgagtgagcgttattatccctggtttgctcagtatatggttatgaagaga
gcaagcattgagccaaattttcatgatctgtacttgaagttccttgataaagtaaatctg
aagtctctgaacaaagaggttgtacaagccacttatgagaactgcaaggtacttctaggg
tcagaacttataaagtcaagttcagaagagcgttcattgctgaaaaatttaggaagctgg
cttgggaagattactattgggaagaatcaagttttaagggcacgagagattgatcccaaa
tctctgattgtggaggcgtatgagaagggacttatgattgctgtcattccttttacatcc
aagattctggaaccatgttctaacagtctagcttatcaacctccaaacccttggacaatg
ggtatacttggattgcttgttgagatttatgcaatgcctaatttaaaaataaatctgaag
tttgatatcgaggtcctgttcaagaaccttggtgtagatttaaaagaagtaacgcctacg
tctcttctcaaggacaaaattcgagaagttgaaggtaatcctgatttttcgaataaagaa
gtaggatcttcacaacctcagatgttaaatgaggtgaagtctggaataatacctacacta
aaccaagttgagcaaccactagatgttgcttcacctcatccgggtgctcattcacatatc
atatctcagtatgcggctcctcttcatactctatctggcacattggctgacgatgagaaa
ttgacaagtccgggagtatcagatcagcttttttccgctcaaggtcttccccaaggacag
tcccaattttcagttaatcagattcctgcgccagcctctaatatggaacagcaagttgtt
atcaataaaaagctccatgcattgggcctgtacttgaatttccagagtgtacttccaatt
gccatggatagagctatcacagagatagtctccagcatcgtgcagcgaagtgtttccatt
gcaactcagacaacaaaggaacttgttttgaaggactacgctttggagcctgatgaaacc
ctcatacgtaatgcagcacatttgatggttgcaaggttggctgggagtctagcacatgtg
acatgcaaggaacctttgcgtggttcaatatcaagccagcttaggggtttgcttcagggc
ttgagcatatcgaatgaacttttagagcaagcgattcaacttgtgaccaatgacaatctg
gaccttggctgtgcagtgattgaacaagctgccactgaaaaggcaattcaaactattgat
ggggaaattgcccagcaacttactatcaggaggaaacatagagagggtgctggtcttaca
tattttgactctagcctgtatgcccaaggtcaaatgggtgttttgccggacgcccttcgc
cctaaacctggacgcctttcacactcacagcagcgtgtttatgaggattttgctcggtta
ccgtggcagaattggtccagtcagggttcaaacgcagcacctgtggttcccattgcttca
tctggcagtgggggactctctcgacagtttgcatccacatctgaccaaataactgctggc
atttacacatctggcattgcaaatgcaggaattagtgtcattccccataatctgaaaatt
ggttacgaggagttagacgccaatgcatcccatcttcctagtgtttcttccactcatatt
gcaactgttgatactcctgctccgcaaagtcttgaaaatgatgtttcttcgttccccctc
gcttctacacctgaattgcatttgacaggaccttctaattatttaaaagaaccagtggct
tcggtgcagtctgttattccaactgtagcatcagatcgtcttggaagcaatgttttggag
cctttattaaccacaggtgatgcgctggataagtaccagactatttcagagaagcttgaa
aatctagtgagtagtgatgccaaggaggcagaaatcgagggagttatagctgaggttccc
gctgttatcctcaggtgcataagccgagacgaggcagctttggcagttgcccaaaaggct
ttcaagggcttatatgaaaaggcagcaaaccgagcttatgtcagtgctcatctagcaatc
ttggctgccattcgtgatgttagcaagcttgttgtgaaggagctcactagttgggtgatg
tactctgatgaggaccggaagttcagtaaggatatcactgttggtcttattggcagcgaa
ttattaaatcttgctgaatataacgtctatatggcaaagcttattgatgcgggaaggaat
aaggctgccacagaatttgccatttctcttatccaaacattagttgtcaatgattctaaa
gtgatatcagaactacacaatcttgttgatgctctggcaaagcttgctgctaggcctgga
tctcccgagtcactgcaacagctagttgagatcgctaagaaccctattgcaaatcttaca
accttgcctactgtgattgttgggaaggaagacaatatgagatcatctaaagacaagaag
gtttttgaagtggttttctcgctcctcctcaccttcaataatcaatatttatccgtatac
attaaattttatgtcctgaaacaggtctctgggctacctgggtcaagcagggaagactac
tcggccacagaattggtggaaccagatcctgctggtctgcatgaacaggtctccatgctg
tttgcagaatggtaccaaatatgtgaacttcctggggcaaatgatgcagcttgcgctcgt
tatgtcatacacttacagcagaggggcctgcttaatggggatgacacctcagagcatttt
ttccgccggctcacggaactttcagtgtcacactgcttatcttctgaggttattaattct
agctcttcccagtcacatttgggacaacctttgtcattccttgctattgacatctatgcg
aaattggtcttctcaattctgaagtttttccctgttgatcacgggcctagtaaactctcg
cttttgcttaagattcttgctgtgaccgtgaagtttattcaaaaagatgctgcagagaag
acgtccttgtttaatcccaggccgtattttaggttgtttattaactggttgttggatttg
tgttccttggacccagtttttgatggcacaaatttccaggttttgactgctttagcaaat
gctttccatgctcttcagcctctaaagattccagggttcagctttgcttggctcgagttg
gttagtcatagaagtttcatgccaaaattactcacggtaaatgcacagaagggatggcct
tattttcaaagacttttggtagacttgttccaattcatggagccattcctgagacttgct
gacctgggagagccgatacaatttctttataaagggacactcagggtcttgttggtgcta
ctccacgatttccccgagttcctttgtgattatcatttcagcttctgtgatgtcattcca
ccaagttgcatacagatgcgaaatataatcctcagtgcatttcctcggaatatgaggttg
cctgatccatctacccccaacttaaagattgacctactggcggaaatcagtcatacacca
cgaattctctctgaggttgatgcagctcttaaagcaaagcagatcaagaatgatgtggat
gagtatctcaagacaaggcagcaagggtcttcatttcttactgagttgaagcagaagctt
ttgcttactccatctgaaggagctcggtctggcagtcgttacaatgttcctctcatgaac
gctcttgtcctttatgttgggatgcaggccatccaacagctgcaatccagagtcccacca
tacacgcagtccatggctagcatgaccgcattcttggttagtgctgctctggacattttc
cagaccttgatactcgatctggactcagagggccgttaccttttcttgaatgctatcggg
aaccagttgcgctatccaaacaaccacactcattacttctctttcatccttctttacctg
ttcaacgaatcaaatcaggaagtatttcaagagcaaatcacccgggtcctgcttgagcga
ttaattgttaatagacctcatccctggggacttctaattacgtttattgagctcatcaag
aatccccgatacaatttctggagccggtcttttacgagatgtgcacctgagattgagaag
cttttcgaatcagtgtcaagatcatgtgggggtccaaaaccagtcgacgatagcgtggtt
tctggtggcttacccgacaatatgcactaa
DBGET
integrated database retrieval system
