Primulina tabacum: 142546125
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Entry
142546125 CDS
T11246
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
ptab Primulina tabacum
Pathway
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142546125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142546125
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
142546125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_11
TPR_2
TPR_14
TPR_16
TPR_17
TPR_8
TPR_19
TPR_CcmH_CycH
TPR_9
BTAD
TPR_NPHP3
mRNA_stabil
Motif
Other DBs
NCBI-GeneID:
142546125
NCBI-ProteinID:
XP_075509763
LinkDB
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Position
5:7852355..7866895
Genome browser
AA seq
1167 aa
AA seq
DB search
MESESESLPADPSLHFNLGVSLWEKGEESQDIRGKAVEHFMMAVKLNPQNGDAFRYLGHY
YAHDSPMPLRALKCYQRAVFLNPDDSCAGEAICDMLDKEGKESLVFAVCCEASEKSARAF
WAFRQLGYLQAHQKKWSEAVHNLQHAIRGFPTCADLWETLGLAYHRMGMLTAALKSYGRA
IELEESRVFAWIESGNISLMLGSFRNGVEQFRNALRISPHNVSAHFGLASALLGFAKECT
NLGAFGWGAILLEEASAVATHGTSLASNVSCLWKLHGDIQLTYARCFPWTEEGLADETAF
SSSISSWRRTCFLAASHASHFYQRALCLTPWQANIYADVAIASDLISSLRVNPEEDLPVW
PLAEKMCLGSILLEGHNEEFWMALGCLSDDIALKQHAFLRGLQLDISLAVAWAYIGKLYR
REGELQLAQQAFDRARSIDPSLALPWAGMSADAETRNLNENEAYECCLRAVQIFPLAEFQ
IGLAKLALNSGQVSSSEVFGAIKQALMRAPEYPESHNLNGLVCESRSDYENAITSYKLAR
WALKSFAAESAEPCLKDISINLARSLCMAGHAEDAVEECEYLRRKGQLSHEGLQVYALCL
WKLNRYDTALSIARELGSRIMTAEKNMAAASISFICRLLYYISGPESAITSILKMPKEFF
HSSKISFIVYAMHALDQKDRLDSVVSLSRACVTSHEEIIAMHLLISLGKLVKHQQKDCLA
FHESVRHLRKALHMYPNNSVLRNLLGSLLLSSKEWRDLGLATRCPIIHLSDHHKKDEGMK
SACEIIGAGTVACFDTKNGNENFAALTCRHQLPFQSGIIKLLQKFLHQEPWNFNARYLLT
VNYLQKARESRFPPHICRVLARLTAVALSHQLCLSKYMCLQYQYFQLLLCSAELNLQQGN
TGECVEHARSALGVSVDNSCLFFAHLLLCRAYAAENDIVSMSKEYRQCLELKTDFHIGWI
CLKFIESRYKLQNDLGISHLSFEDCFKDMELSWNMWMGIFNMVEGLSAIWFGDFVAAEEF
LAQACDVAESEIFLFLCHGAICMELARQKFEAQYISCAIRSLKKAKEISPGPLPIISLLL
AQAEASLGSKAKWEKNLHDEWLSWPSEMRPAELLFQMHLLSRQLKDGSESSSIRDSGGSS
LKWMLRAIHINPSCLRYWKLLQKEHVH
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atggagtccgagtccgagtccttgccagctgacccatctctccattttaatctgggagtt
tctttatgggagaaaggtgaggaaagtcaagatatcaggggaaaagcggtggagcatttc
atgatggccgtgaagcttaaccctcagaatggggatgcattcagatatctgggtcactat
tatgcacatgattctcccatgcctcttcgggctctcaagtgctaccaaagagctgtcttt
ctcaaccctgatgattcttgtgcaggggaagcaatttgtgatatgttggacaaagaaggg
aaagagagcttggtgtttgctgtctgttgtgaagcttctgagaagtctgccagggccttt
tgggcttttcgtcaattgggttaccttcaggctcatcagaagaaatggtcagaagctgta
cataatcttcagcatgccattcgtggctttcctacctgtgctgatttgtgggagacctta
ggtcttgcctaccatcgaatgggcatgttaactgctgcactcaagtcgtatggtagagcc
attgagttggaggagtccagggtttttgcatggatcgagagtggaaatatttccttgatg
cttggttcttttagaaatggagtcgagcaatttaggaatgcattaagaatttcacctcac
aacgtttctgcgcattttgggcttgcttctgcacttcttggttttgctaaagaatgcaca
aatttaggtgcttttggatggggagctatactcttagaggaagcttctgctgtggcaact
catggtacatcattggctagcaacgtttcgtgtttatggaagctgcatggtgatatccag
cttacatatgcaagatgtttcccatggactgaggaagggctagctgatgagactgctttc
agttcttctatcagttcctggagaagaacttgcttcctcgctgcatcacatgctagccac
ttctatcaacgtgctttgtgcttgactccctggcaagctaatatatatgctgatgttgcc
attgcgtcagatctcatttcctctttgagggtgaatcctgaagaggacctacctgtgtgg
ccgttggctgaaaagatgtgcttgggtagtatacttcttgagggccacaatgaggaattt
tggatggctctggggtgtttatcagatgatattgcattaaagcaacatgctttcttacgt
gggttgcaattggatatatctctagctgttgcatgggcatacattgggaagctttatagg
cgagaaggtgaactacagttggcccaacaagcattcgatcgcgctagaagtatagatccc
tctcttgcacttccttgggcaggcatgtcggcagatgctgagactagaaatctcaatgag
aatgaagcatatgaatgttgtttacgagctgtgcagatatttccgcttgcagaattccaa
attggtcttgcaaagcttgccttgaattctggccaggtatcatcttcagaggtgtttggt
gccatcaagcaggctttgatgcgtgcccctgaataccctgaatctcacaatttgaatggc
ctagtatgtgaatcaagatctgattatgaaaatgctattacctcgtacaagcttgcacgt
tgggctctaaaatcttttgcagcagaatcagcagaaccttgtctcaaagatatttccatc
aatttggctagatcactttgtatggcaggacatgcagaagacgctgttgaagagtgtgaa
tatttaaggcgaaaaggacagcttagccacgaaggtctacaagtatatgctctatgttta
tggaaacttaacagatatgatacggctctgtccattgctagagaacttggttcccgcatc
atgaccgcggagaaaaatatggctgctgcttccattagcttcatctgtagattgctgtat
tacatttcaggaccggaatcagcaattacaagcatactgaaaatgcccaaggagtttttt
catagttcaaagattagtttcatcgtttatgctatgcacgcattggaccaaaaagatcgg
cttgattctgttgtgtctcttagtcgtgcttgtgttacgtctcatgaagagataattgca
atgcaccttctaatttctctcggtaaacttgttaagcatcaacaaaaggattgccttgcg
tttcacgagagtgtacgacacctgagaaaggctcttcacatgtatcctaacaatagtgtc
ctaagaaatcttcttggttctctcttactgtcgagcaaagaatggagagatcttggtctt
gcaaccagatgccccatcattcacttatcagaccaccataaaaaagacgagggcatgaaa
tcagcatgtgagatcattggtgctggaacagttgcctgttttgacacaaaaaacggcaat
gagaattttgcagctttaacctgtagacaccaactgccatttcagtctggaatcataaag
ctgctgcaaaagtttttacatcaagagccgtggaactttaatgctaggtatttgcttaca
gtaaactatttacagaaggcccgtgaatcaagatttcctccacatatttgccgtgttcta
gcgaggctaacagctgttgctctgtctcatcagttgtgcttgagtaaatatatgtgtctc
caatatcaatatttccagcttttactctgttctgctgagttgaatttgcaacaaggaaat
actggagaatgcgttgaacatgctagaagtgctttgggtgtttcagttgacaatagctgt
ctcttttttgcacacttactattgtgccgtgcatatgctgctgaaaatgatattgtcagc
atgagcaaagaatacagacaatgcttggaactcaaaactgattttcatattggttggatt
tgtctgaagtttatagaatctagatataagctgcaaaatgatcttggcatatcacactta
agctttgaggattgcttcaaagatatggagctttcatggaatatgtggatgggtatattt
aatatggtggagggtttgtctgcaatttggtttggtgattttgttgctgcagaagaattt
cttgcacaagcttgcgatgtagcagagagcgagatatttctctttctttgtcatggtgcc
atctgcatggagctagccagacagaagtttgaggcacagtacatatcatgtgccataaga
agtctaaaaaaagcgaaagagatttctccgggccccttgcctatcatctcgcttttgctt
gcacaagcggaagcgagccttggttccaaagcaaaatgggaaaagaaccttcatgatgaa
tggctctcttggccttcagaaatgaggccagctgagctcttatttcaaatgcatttgctt
tccagacagctgaaagatggttccgagtcgtcatccattcgggattcaggtgggagttcg
cttaaatggatgctgagagcgatccacatcaatccctcatgtttgagatattggaagctt
ttgcaaaaagaacatgtacattga
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