KEGG   Pseudomonas taetrolens: NCTC10697_04072
Entry
NCTC10697_04072   CDS       T08085                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein
  KO
K03666  host factor-I protein
Organism
ptae  Pseudomonas taetrolens
Pathway
ptae02024  Quorum sensing
ptae03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ptae00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NCTC10697_04072 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    NCTC10697_04072 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptae03019]
    NCTC10697_04072 (hfq)
   03036 Chromosome and associated proteins [BR:ptae03036]
    NCTC10697_04072 (hfq)
Messenger RNA biogenesis [BR:ptae03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     NCTC10697_04072 (hfq)
Chromosome and associated proteins [BR:ptae03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    NCTC10697_04072 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1 Gag_p24_C
Other DBs
NCBI-ProteinID: SQF88251
LinkDB
Position
1:complement(4368342..4368602)
AA seq 86 aa
MSKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAIS
TVVPVRPIRLPSAAESELADAEPGNA
NT seq 261 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcattcgctacaagacccttacttgaatactttgcgtaaagagaaggtt
ggcgtttccatctacttggtcaacgggatcaagctgcaggggaccatcgaatctttcgat
cagttcgttattctgctgaaaaacactgttagccaaatggtttacaaacacgctatctcg
acagtagtaccagttcgcccaattcgtttgcctagcgcagctgaatcggaactggcagat
gctgaaccaggtaacgcctga

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