Pseudomonas taetrolens: NCTC10697_04072
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Entry
NCTC10697_04072 CDS
T08085
Symbol
hfq
Name
(GenBank) RNA-binding protein
KO
K03666
host factor-I protein
Organism
ptae
Pseudomonas taetrolens
Pathway
ptae02024
Quorum sensing
ptae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10697_04072 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
NCTC10697_04072 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptae03019
]
NCTC10697_04072 (hfq)
03036 Chromosome and associated proteins [BR:
ptae03036
]
NCTC10697_04072 (hfq)
Messenger RNA biogenesis [BR:
ptae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
NCTC10697_04072 (hfq)
Chromosome and associated proteins [BR:
ptae03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
NCTC10697_04072 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Gag_p24_C
Motif
Other DBs
NCBI-ProteinID:
SQF88251
LinkDB
All DBs
Position
1:complement(4368342..4368602)
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AA seq
86 aa
AA seq
DB search
MSKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAIS
TVVPVRPIRLPSAAESELADAEPGNA
NT seq
261 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagggcattcgctacaagacccttacttgaatactttgcgtaaagagaaggtt
ggcgtttccatctacttggtcaacgggatcaagctgcaggggaccatcgaatctttcgat
cagttcgttattctgctgaaaaacactgttagccaaatggtttacaaacacgctatctcg
acagtagtaccagttcgcccaattcgtttgcctagcgcagctgaatcggaactggcagat
gctgaaccaggtaacgcctga
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