Pseudoalteromonas tetraodonis: PTET_a0248
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Entry
PTET_a0248 CDS
T05282
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ptd
Pseudoalteromonas tetraodonis
Pathway
ptd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ptd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PTET_a0248 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptd03021
]
PTET_a0248 (rpoB)
03400 DNA repair and recombination proteins [BR:
ptd03400
]
PTET_a0248 (rpoB)
Enzymes [BR:
ptd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PTET_a0248 (rpoB)
Transcription machinery [BR:
ptd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PTET_a0248 (rpoB)
DNA repair and recombination proteins [BR:
ptd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PTET_a0248 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ATD01834
LinkDB
All DBs
Position
I:243800..247513
Genome browser
AA seq
1237 aa
AA seq
DB search
MDKEAPGTVKDIKEQEVYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDNDRGKTH
SSGKVLYNARVIPYRGSWLDFEFDAKDNLYVRIDRRRKLPASIILRALEYTSEEILDIFF
DTTAFEIADGKVLMELVPSRLRGETAAFDIKSEDGEVLVESGRRVTARHIKSIEKKGINQ
LEVPHEYIIGRVLAKNYVDESTGEIIATANDELTLEMMAELVKAGHTTIDTLYINEVDSG
AYMSNTLNIDSSSNRLEALVEIYRMMRPGEPPTKDAAEALFENLFFSEERYDLSTVGRMK
FNSRVGYDSDTGPGTLSKEDIVAVMKVLIAIRNGVGDVDDIDHLGNRRIRSVGEMAENQF
RVGLVRVERAVRERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEV
THKRRISALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLSTYARTNDY
GFLETPYRKVVDGVVTDEVDYLSAIEEGQFVIAQANSNLTETNEFVDELIPCRHKGESTF
MGRMDQQYMDVSPQQVISVAAALIPFLEHDDANRALMGSNMQRQAVPTLKADKPLVGTGI
ELTLAKDSGVTIVAKRGGEVMYADASRIVVNVHEEERIPGEAGIDIYNLTKYTRSNQNTC
INQKPTCMVGEPVTRGDVLADGPSTDLGDLALGQNLRVAFMPWNGYNFEDSILLSERVVE
EDRLTTIHIQELQCIARDTKLGSEEITADIPNVGESALGKLDESGVVYIGAEVKGGDILV
GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVTGTVIDVQVFTRDGVEKDKR
ALEVEDMQLREAKKDFNEEFRILEAGVLDRARKLLVAAGFDEDNLASLNAEKLLTQSLAE
EDKQAELEQLAAQYDELKAEYDKKFENKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD
KMAGRHGNKGVISTIVPVEDMPYDDKGRTVDIVLNPLGVPSRMNIGQILETHMGLAARGI
GERLEEMMKEQRELHELREFIKQAYEIGESRQVVDIASFSDDEIRRLAENLKGGLPIATP
AFDGAKESEIKDMLELGGYPRSGQVTLYDGRTGDQFERQVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGNHKMEPGMPESFNVLLKEIRSLGINIELEEN
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagaagctccaggcacagttaaagacattaaagagcaagaagtttacatgggc
gaaattccgctcatgaccgataccggtacttttgtaatcaatggtacagagcgtgttatc
gtttctcagctacaccgtagccctggtgtattctttgataacgaccgcggtaaaactcac
tcgtcaggtaaagtgctttataacgcacgcgtaattccttaccgtggttcatggttagac
ttcgaatttgatgcaaaagataacttatatgtacgtattgaccgtcgtcgtaaattaccg
gcgtctatcatcttacgtgcacttgagtacacgagtgaagaaatcctagatatcttcttc
gatactactgcgtttgaaattgctgacggtaaagttcttatggaacttgtaccttcacgt
ttacgtggtgaaactgccgcttttgatatcaagagcgaagacggtgaagtccttgttgaa
agcggtcgtcgtgttacggctcgccacatcaagagcatcgagaaaaaaggcattaatcaa
ttagaagtaccacatgagtacatcattggccgtgtattagcgaagaactatgttgatgag
tcaacaggtgaaatcatcgcgactgcaaatgacgagctaacgcttgaaatgatggctgaa
ttggttaaagcaggtcacactactattgatacattatatatcaatgaagtggacagcggc
gcttacatgtcaaatacattaaacattgactcgtcaagcaaccgtttagaagcactagta
gaaatttatcgcatgatgcgcccaggcgagccaccgacgaaagacgcggctgaagcctta
tttgagaacttattcttctcagaagaacgctatgacttatcaacagtaggtcgtatgaag
ttcaatagccgtgttggttacgattcagacacaggccctggcacattaagcaaagaagac
atcgtagcagttatgaaagtattgattgctattcgtaacggtgttggcgatgttgatgat
atagaccacttaggcaaccgtcgtatacgtagtgttggcgaaatggctgagaaccaattc
cgtgtaggtttagtacgtgtagaacgtgctgtacgtgagcgcttaagcttaggtgactta
gacgcgatcatgccacaagatcttattaacgctaagcctatttcggcagcagttaaagag
ttcttcggctcgtctcagttatcacagtttatggaccaaaataacccgctatcagaagta
acgcacaagcgtcgtatttctgcattaggtccgggcggtctaactcgtgagcgtgctggc
tttgaagtacgtgacgttcacgtaactcactacggtcgtgtatgtccaatcgagactcct
gagggtccaaacatcggtctaattaactcattgtctacgtatgcacgtaccaatgactac
ggtttcttagaaacaccttaccgcaaagtggtagacggtgtagtaactgatgaagttgat
tacctatcagccattgaagaaggtcagtttgttatcgcacaggcgaactcaaacttaact
gaaaccaatgagtttgtagatgaacttattccatgtcgtcacaaaggtgaatcaaccttt
atgggtcgcatggaccaacaatatatggatgtatcaccacaacaggtgatctctgtagcg
gccgcacttatcccgttcctagaacacgatgatgctaaccgtgcattgatgggttcaaac
atgcaacgtcaagcagtaccaacattgaaagcggacaaaccgttagtaggtactggtatt
gagttaacactagcgaaagactctggtgtaacgattgttgcaaaacgtggtggtgaagta
atgtatgccgacgcaagtcgcatcgttgttaatgtacatgaagaagaacgcattcctggt
gaagcgggcatcgacatctacaacttaaccaagtacacacgttctaaccaaaatacatgt
attaaccaaaaaccaacatgcatggttggtgaaccggttactcgtggcgatgtgttagca
gatggtccttcgactgacttaggtgacttagcccttggtcaaaaccttcgcgtggcattc
atgccatggaacggttacaacttcgaggattcaatcttactatcagagcgcgtagttgaa
gaagatcgtctaacgactattcatattcaagaactacagtgtattgcccgtgatactaaa
ttaggctcagaagagatcacagcagatatcccgaacgtgggtgaatctgcactaggcaag
cttgatgaatcaggtgttgtatatattggtgctgaagttaaaggcggcgatatcctagta
ggtaaagtgactccgaaaggcgaaacgcaattaacaccagaagaaaagctactacgtgct
atcttcggtgaaaaagcgtctgatgttaaagacagctctttacgtgtacctaactctgta
actggtactgtaatcgacgtacaagttttcactcgtgatggtgttgaaaaagataaacgt
gcgttagaagttgaagacatgcagcttcgcgaagcgaaaaaagacttcaacgaagagttc
cgtattctagaagccggtgttttagaccgtgcacgcaagttacttgtggcagctggtttc
gatgaagacaacttagcgtcactgaatgctgaaaagttactaactcaaagccttgctgaa
gaagacaagcaagctgaacttgagcaactagctgcacagtacgatgagcttaaagctgaa
tacgataagaagtttgaaaacaaacgtcgtaaaattacccaaggtgatgacttagcacca
ggcgtacttaagattgttaaagtatacctagctgttaaacgtcgtatccaaccgggtgat
aaaatggcgggtcgtcacggtaacaaaggtgttatctcgactatcgtaccagtagaagat
atgccatacgatgacaaaggtcgtacggtagatatcgtactaaatccactaggtgtacca
tcacgtatgaacatcggtcagatccttgaaacacatatgggtctagctgcacgtggtatt
ggtgagcgcttagaagaaatgatgaaagagcaacgcgagcttcatgagctacgcgaattc
attaaacaagcttatgagatcggtgagtctcgtcaggttgtggatattgctagtttctct
gatgacgaaattcgtcgtttagctgaaaacttgaaaggtggtttaccgattgctactcct
gcatttgatggcgcgaaagaaagcgaaatcaaagacatgctagagctaggcggctaccct
agaagtggtcaggttacactttatgatggccgtactggcgatcagtttgaacgtcaagta
actgtaggttacatgtacatgcttaaacttaaccacttggttgacgataagatgcacgca
cgttctactggttcttacagccttgttactcagcagccgctgggtggtaaagcacagttc
ggtggccagcgttttggtgagatggaagtatgggcacttgaagcttacggtgctgcttac
acgctacaagaaatgctaacagtgaaatcggatgacgtgaacggtcgtactaagatgtat
aaaaacatcgttgatggtaaccataaaatggaaccaggtatgccagaatcgttcaacgta
ttgttgaaagaaatccgctcactgggtatcaacatcgagttggaagaaaattaa
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