Parasteatoda tepidariorum (common house spider): 107439296
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Entry
107439296 CDS
T06106
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ptep
Parasteatoda tepidariorum (common house spider)
Pathway
ptep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107439296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptep03019
]
107439296
Enzymes [BR:
ptep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
107439296
Messenger RNA biogenesis [BR:
ptep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107439296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
CbiA
nSTAND3
AAA_16
AAA_35
AAA_22
AAA_18
ATP_bind_1
AAA
AAA_24
TniB
AAA_14
ATPase
Motif
Other DBs
NCBI-GeneID:
107439296
NCBI-ProteinID:
XP_015907325
LinkDB
All DBs
Position
3:29170881..29172329
Genome browser
AA seq
427 aa
AA seq
DB search
MTEESTEPVADTDTQEFKLDEQTELRFEVEPKCTITLELKNGTAEIFGTELVKNRKFAFS
SCEKVAVFSWHGCTLELTGKPEVAYVAQETPSVFYINIHGALEQMRVKAEKDDSKGPVVL
VAGPSDVGKTTLCRILLNYAVRLNRRPVFVDLDVELSSISIPGTVAALPVERVADVEEGF
SLTAPIVYHYGHTNPSTNIMLYNTLVSQLSAVVSTRASHNSRANVSGTIINTGGWIKAEG
YQALKHAAKAFEVDVILVIDQERLYNELVRDMPKFIQIVFVPKSGGVVERSVQARAEAQD
SRIRQYFYGLRTHLYPHSFDVKFSEMKVFKIGAPSLPDSCMPMGMKAEDNRTKLVPVQTG
LNLLHHILSISFADNAGDDVVTTNVAGFICVTNVDVERQVVTVLSPHPRPLPKNIFLIGD
IQFMDAR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgactgaagaatctactgaacctgttgcagatacagatacgcaagagttcaagctcgat
gagcaaacagagctccgctttgaagttgagcccaaatgtactattaccctagaattaaaa
aatggtacagctgaaattttcggtactgagctcgttaaaaataggaaattcgctttttct
tcttgcgaaaaagtagcagtattttcttggcatggatgtacgctggaactaaccggaaaa
cctgaagttgcatatgttgctcaagaaacgccctctgtattttacataaacattcatgga
gctttggaacaaatgcgagtcaaagctgagaaggacgattctaaaggacccgttgtgttg
gtagctgggccatctgacgttggcaaaactacgctctgccgtattttattaaactatgca
gttcgattgaaccgaagaccagtatttgttgacttggatgttgaactatcgtctatatca
atacctggaactgttgctgcccttcctgttgaaagagttgctgatgtcgaagaaggattt
tctttaactgcccctatagtatatcactatgggcatactaatcctagcactaatattatg
ctatataatactttagtatcacagttatctgctgtggtatcaactagagcctctcataat
agtagagcaaatgtaagtggaactataattaacacgggtggctggattaaagcagaaggt
tatcaagctctgaaacacgctgctaaggctttcgaagtcgatgtgatattggttattgat
caagagcgattgtataatgaactagtccgtgatatgcctaagtttattcaaattgtgttc
gtgcccaagtctggcggcgttgtcgaacgtagtgtgcaagctcgtgccgaggcacaagat
agtcgtattaggcaatatttttatggattgaggactcacttgtatccacattctttcgat
gtcaagttctcggagatgaaagtgtttaagattggtgcaccatcgttgcctgactcttgc
atgccgatgggaatgaaggcggaagataatagaaccaaactagttccggtacaaactggt
ctaaacctgttgcatcatattttgagtatcagctttgctgataatgctggtgatgatgtc
gtgactactaatgttgccggttttatttgtgttactaatgttgatgttgaacgtcaagtt
gttactgttttatcgccgcacccaagacctttgcctaaaaatatttttttaataggtgat
attcagtttatggatgctcgttga
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