Puntigrus tetrazona (Sumatra barb): 122326426
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Entry
122326426 CDS
T08985
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122326426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptet03041
]
122326426
Enzymes [BR:
ptet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122326426
Spliceosome [BR:
ptet03041
]
Complex A
U2 snRNP components
U2 related factors
122326426
Complex B
122326426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
PMI_typeI_cat
Motif
Other DBs
NCBI-GeneID:
122326426
NCBI-ProteinID:
XP_043077229
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All DBs
Position
21:18840209..18849590
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AA seq
1024 aa
AA seq
DB search
MGRESRHYRKRSGSRSKSRSPDPKRSKKEDQTGSRTRERSRRERSRSRERRRSRSRDRKR
QRRSRSRERRRSRSRERKSRGRSKEKSENGEPSAEKKKIKEEKEEEKAEDQDFDQNTLEE
EMRKRKERVEKWREEQRKKAMENIGEIKKELEEMKQGKKWSLEDDDDDDEETQAPVEPEG
EEEEGEKDRAAGVEEVLSMEQETGEELDPLDAYMEEVKEEVKKFNMGTMKGGNDKKGSVS
VTKVVTVVKTKKMVHTTKKKGELMENDQDAMEYSSEEEEVDLQTALTGFQTKQRKVLEPV
DHQKIEYESFRKNFYVEVPELARMSPEEVNEYRLELEGITVKGKGCPKPIKTWVQCGISM
KVLNAMKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPLG
EAEGPIAVIMTPTRELALQITKECKKFSKSLGLRVVCVYGGTGISEQIAELKRGAEIIVC
TPGRMIDMLGANNGRVTNLRRVTYVVMDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA
TFPRTMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLEILGHYQEKGS
VIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAAR
GLDVKQLILVVNYGCPNHYEDYVHRAGRTGRAGNKVCVSTFITESKLRGDIIKALDGSAV
XELELLWTNFKEQQRQEGKSIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLHDSDD
EDPALDIDEQIESMFNSKKRVKDFSAPGGASGAAAVGVSGSLNAVSGLSGLSAPSAGNIQ
KLEIAKKLALKIQAQKNLGAEAQDVMQQATNAILRGGTMIAPSVSAKTIAEQQAEKINAK
LNYTPVEKLEEERQAAEAAETVKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAIT
IRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNSYQPTSKSR
YKVL
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgggacgagagtcgcggcactacaggaagcgttccggctccaggtccaagagccgctcg
ccggaccccaagcgctcgaagaaggaggatcagacggggtcccgcacccgcgagcgcagc
cggagagagaggtcacgcagccgagagcgccgccgctcacgctccagagaccgcaagaga
cagaggcgctccaggagccgagaacggagacgctcccgcagccgagagcgcaagagccga
gggaggagcaaggagaagtcagagaatggagagccatctgctgaaaagaagaagatcaag
gaggagaaggaggaggaaaaggcagaagatcaggactttgaccagaacacacttgaggag
gagatgaggaagaggaaggagcgtgtggagaaatggagagaggagcagaggaagaaagcc
atggagaacatcggagaaatcaagaaagagctggaggagatgaagcaggggaagaagtgg
agtctggaggatgatgatgatgacgatgaggagactcaggctcccgtggagccggaggga
gaggaagaggagggagagaaagacagagcggccggcgtcgaggaggtgttgagtatggag
caggagaccggagaggagctggacccgctggacgcctacatggaggaggtcaaagaggag
gtcaagaagttcaacatgggcaccatgaaaggaggcaacgacaagaaaggcagcgtgtct
gtgaccaaagtggtgaccgtagtgaagacgaagaagatggtgcacaccaccaagaagaaa
ggagagctgatggagaacgaccaggacgccatggagtattcatcagaggaggaggaagtg
gacctgcagacggccctcacaggttttcagaccaaacagaggaaggttctggagccggtt
gatcatcagaagattgagtacgagtctttccgtaagaacttctatgtggaagtgccagag
ctggcccggatgagtcctgaagaggtcaacgagtaccgtctggagctggaggggatcacc
gttaaagggaaaggctgtccgaagcccatcaagacctgggtccagtgcgggatttccatg
aaagtgctgaacgccatgaagaaacacaactatgagaagccgactccgatccaggcccag
gccatcccggccatcatgtcaggacgtgacctcatcggcatcgctaaaacaggaagtgga
aagaccatcgccttcctgctgcccatgtttcgccacatattagaccagcggcccctggga
gaggcagaggggcccatcgccgtcatcatgaccccgactcgtgagctggctctgcagatc
accaaagagtgcaagaaattctccaagtctctgggtctgcgtgtggtgtgtgtgtacggc
ggcaccggcatcagcgagcagatcgcagagctgaagcgcggcgcagagatcatcgtctgt
accccggggagaatgatcgacatgctgggagccaacaacggtcgcgtcaccaatctgcgc
agagtcacgtatgtggtgatggacgaggctgaccgcatgttcgacatgggcttcgagccg
caggtgatgcgtatcgtggataacgtgcgtccggaccggcagacggtgatgttctcggcc
acgttcccacggaccatggaggctctggcgcgccggatcctgtccaaacccatcgaggtg
caggtgggcggccggagcgtggtgtgctccgacgtggagcagcacgtgattgtgatcgag
gaggagaagaagttcctgaagctgctggagattctgggtcactatcaggagaagggctcc
gtcatcatcttcgtggacaagcaggagcacgctgacggtctcctcaaagacctgatgaag
gcctcgtacccctgcatgtccctccacggaggcatcgatcagtacgacagggacagcatc
atcaacgacttcaagaacggtgcgtgtcgtctgctggtggccacgtctgtggcggctcga
ggtctggacgtcaagcagctcatcctggtggtcaactacggctgccccaatcactacgag
gactacgtgcaccgcgccggacgcaccggacgagctgggaacaaggtgtgtgtgagcacc
ttcatcacggagagcaagttacgcggagacatcatcaaagctctggacggatcggccgtt
nncgaactcgagctgctctggaccaacttcaaggagcagcagaggcaggagggcaagagc
atcaagagcagcagcggtttctctgggaagggcttcaagttcgacgagacggagcacgct
ctggccaacgagaggaagaagctgcagaaggctgcactgggcctccatgactccgacgac
gaggatccggctctagacattgacgagcagatcgagagcatgtttaactctaagaagcgg
gtgaaggacttctcggcgccgggcggagcgtctggagcggcggcggtgggggtgagcggc
tccctgaacgctgtgtccggtctcagtggactgagcgctccgtccgccggaaacatccag
aaactggaaatcgccaagaaactggccctcaagatccaggcgcagaagaacctcggcgca
gaagcacaggacgtgatgcagcaggcgacgaacgctatcttgcgcggcggaacgatgatc
gcaccctcggtgtcggctaagaccatcgcagagcagcaggcggagaagatcaacgccaag
ctgaactacacaccggtggagaaactggaggaggagcggcaggccgctgaagctgctgag
accgtcaagagatacgaggaggagctggagatcaacgacttccctcagacggcgaggtgg
aaggtgacgtctaaggaggctcttcagcggatcggcgagtattcagaggcggccatcact
atacgaggaacatacttccctccgggcaaagagcccaaagaaggagaacgcaagatctac
ctggccatcgagagtgcgaacgagctggcggtgcagaaggctaaagcagagatcacgcgg
ctgatcaaagaagagctgatccgtctgcaaaactcgtaccagcccaccagcaagagccgc
tacaaggtgctgtag
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