Puntigrus tetrazona (Sumatra barb): 122356132
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Entry
122356132 CDS
T08985
Symbol
col9a1b
Name
(RefSeq) collagen, type IX, alpha 1b
KO
K08131
collagen type IX alpha
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet04510
Focal adhesion
ptet04512
ECM-receptor interaction
ptet04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122356132 (col9a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122356132 (col9a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122356132 (col9a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ptet00535
]
122356132 (col9a1b)
Proteoglycans [BR:
ptet00535
]
Extracellular matrix (ECM) proteoglycans
Others
122356132 (col9a1b)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
122356132
NCBI-ProteinID:
XP_043110553
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Position
13:complement(15227332..15253357)
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AA seq
922 aa
AA seq
DB search
MIWREVCLYVLWDLIKRCFCTGLHAHIMPFSSMSHLQTDQTLCPLTKDGNDLFPGFYIMT
QFNIAELARRGTVKKVPGTTSQHIAYRIGPEFNFRINTRSAFPTGLPEELAFSATYRMSG
NTHKKSWNLWQMQDLNGNEQLAVRLNGEALSVEFSYRTQENRQMTALFPYQTLLFNSQWH
KIVLLVKKGSVSLITDCTATDSQQLAPRGQVNLDGFTHIGKMKDNSAIAVPFELQSMLIH
CDLNIPQRDTCGDLPARREISEAEFQRAGGGPAGPPGVPGIDGIDGDRGDTGEDGSAGPD
GDLGKPGSAGLPGLPGADGLTGPTGEPGPDGPPGQKGEPGKPGPRGGAGVGPDGPIGPPG
PGGLPGEQGKVGPPGAMGVRGPQGPRGPTGPRGAAGMLGGTMELCPNACPPGSPGHPGLP
GMKGHKGVKGESGEPGKQGHKGEEGDQGAPGEVGTQGPTGPQGIRGSTGMLGSKGETGPR
GVDGDPGPQGVAGATGDRGQRGVMGESGPKGEQGPQGPRGNSGLPGPKGDGGLPGVDGRE
GIPGMPGTKGAGGKPGSPGEVGLQGLPGLPGSPGPKGGGGEKGNAGQPGLIGTMGSAGKP
GERGEQGEGGPIGPIGQPGDRGEQGPPGPMGKPGARGPKGDLGLPGLPGPPGLPGIKGDR
GDSGEPGPKGEQGAQGDEGTAGDKGDVGDPGQPGAKGEVGNLGDPGNRGPEGARGQPGIE
GPPGSPGPRGMQGNRGAPGPRGTQGPAGKEPSDQHIRQVCMRVMQEQLAQLAASLRRPES
GAVGLPGRPGPPGPPGPPGDSGFPGHAGARGLPGLKGPPGLLGLKGPKGEMGDRGQRGPT
SRGPKGMPGPPGLPGEPGKPGYGQDGRDGERGPPGTPGQPGVPGPPGSAGPPGYCDPSAC
NLSAGAAHQSLKDSSMKGPGGN
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgatctggagggaagtttgtctctacgttttgtgggatttgatcaaacgatgcttctgc
actggtcttcatgcgcatatcatgccattttccagtatgagtcacctgcagacggaccaa
actctgtgtcctctaactaaagatgggaatgacttatttccaggtttttacataatgact
cagttcaacattgccgagttggcgaggagagggacggtgaagaaggtgcccggaacgaca
tctcagcatatcgcatataggattggccccgagtttaacttcaggataaacaccagatct
gcatttcccacggggctgcctgaggaattagcattttctgcaacctatcgaatgagtgga
aatactcacaagaagagttggaatttatggcaaatgcaagatctgaatggaaatgaacag
cttgcagtcagactcaacggggaggccctgtcggtggagttctcttacagaacccaagag
aacagacagatgacggctttattcccttaccaaacactcctcttcaattctcagtggcac
aagattgtattgcttgtcaaaaaaggttctgtgagcctgataacagactgcacagcaaca
gattcacagcagctggcacccagaggacaagtaaacctagatggattcacgcatattgga
aaaatgaaggacaattcagcaatagctgtgccgtttgagctgcagtcaatgctgatccac
tgcgacttaaacatcccgcagagagacacatgtggtgaccttcctgcaaggagagagata
tccgaggcagagtttcagagggctggaggcggccctgctggtcctcccggtgtgcctgga
atagatggtattgatggtgatagaggcgacaccggtgaagacggttcggctggtcctgat
ggagatcttggaaaacctggttctgctggacttcctggattacctggagctgatggattg
actggccccacaggagaaccaggccccgatggccccccaggacaaaagggagaacctggc
aaacctggacccagaggaggggcgggtgttggacctgatggaccaattggcccaccagga
ccaggaggacttccgggtgagcagggaaaagttggaccccctggagccatgggtgtgaga
gggccacaggggccccgtggaccaacaggcccccgtggtgctgcagggatgctgggtgga
acaatggaattgtgccctaacgcatgcccacctggatctcctggtcatcctggcttgcct
ggaatgaagggtcataaaggggtgaaaggagaatctggagagcctggcaaacaagggcac
aagggagaggagggagatcagggggcacctggagaggtcggaactcaaggcccaactggg
ccgcagggaattcgaggttccaccggtatgcttggctccaaaggagagacggggcctcga
ggtgttgatggggaccctgggcctcaaggtgttgcaggagccactggggatcgaggccag
agaggagtaatgggagaaagtggccctaaaggcgaacagggacctcaagggccaagaggc
aacagtggtcttccagggccaaagggagacggtggtttgccaggtgtggatgggcgtgag
ggaatccctggcatgccaggtaccaagggtgctggtggaaagcctggaagccctggggaa
gttggccttcaaggacttcctggtttaccaggaagcccaggaccgaaaggtggaggtggg
gaaaagggtaatgcaggacaaccgggcctcatcggtactatgggatctgcaggtaaaccg
ggtgaacgtggagaacaaggagaaggcggacccattgggcctattggacaacctggagac
cgaggagagcaggggccacctgggccaatgggaaaaccaggagcaagaggtcctaaaggt
gacttgggcttgcctggacttcctggaccaccgggcctgccaggaataaaaggagatagg
ggtgattcaggagaacctggaccaaagggagaacagggcgctcaaggtgacgaggggaca
gcaggagacaagggagatgttggtgaccctggccaacctggagctaaaggcgaagttggt
aacctaggggatccgggtaacagaggaccagagggagcccgtggacagcctggcatcgag
gggcctcctggtagtcctggaccacgtggcatgcaggggaacagaggagctccaggacct
cgtggcacacagggaccggcgggtaaagagccgagtgatcagcacatcagacaagtgtgc
atgcgcgttatgcaggagcagctggcccagttggcagccagtctgaggagaccagagtct
ggagcggtcggactgccaggcagacccggcccccctggtcctcccggacccccaggtgac
agcggcttccctgggcatgctggtgctagaggactcccgggactcaaagggcctccggga
cttttgggtctcaaggggccgaaaggtgagatgggagacagaggtcaaaggggacctacg
agtcggggacccaaaggcatgccgggacctccaggactaccaggtgaacctggaaaacca
ggatacggccaagatgggcgtgatggagaacggggtccgcctggtacccccggtcagccg
ggcgttcctggacctcctggttcagccggaccacctggttactgcgatccttcggcctgt
aatctgagcgcaggtgctgcccatcagtccctcaaagactctagcatgaagggaccgggc
ggaaactaa
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