Phaeodactylum tricornutum: PHATRDRAFT_29196
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Entry
PHATRDRAFT_29196 CDS
T01075
Symbol
PCNA
Name
(RefSeq) proliferating cell nuclear antigen
KO
K04802
proliferating cell nuclear antigen
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03030
DNA replication
pti03410
Base excision repair
pti03420
Nucleotide excision repair
pti03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PHATRDRAFT_29196 (PCNA)
03410 Base excision repair
PHATRDRAFT_29196 (PCNA)
03420 Nucleotide excision repair
PHATRDRAFT_29196 (PCNA)
03430 Mismatch repair
PHATRDRAFT_29196 (PCNA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pti03032
]
PHATRDRAFT_29196 (PCNA)
03400 DNA repair and recombination proteins [BR:
pti03400
]
PHATRDRAFT_29196 (PCNA)
DNA replication proteins [BR:
pti03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
PHATRDRAFT_29196 (PCNA)
DNA repair and recombination proteins [BR:
pti03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
PHATRDRAFT_29196 (PCNA)
MMR (mismatch excision repair)
Other MMR factors
PHATRDRAFT_29196 (PCNA)
TLS (translesion DNA synthesis) factors
Other TLS factors
PHATRDRAFT_29196 (PCNA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCNA_C
PCNA_N
Rad9
Hus1
Motif
Other DBs
NCBI-GeneID:
7203226
NCBI-ProteinID:
XP_002182261
JGI:
29196
UniProt:
B7G5K3
LinkDB
All DBs
Position
15:612554..613576
Genome browser
AA seq
260 aa
AA seq
DB search
MFEARLVEGKIFKQIIESIKDLVTDANIECTEEEIAIQCMDSAHVSLVDVTLSAAAFDHY
RCDRNLSLGFNSANMSKIFKMMNPDDVVVMKAEDNGDALTMMFESTKTETIADFELKLME
IDSEQLAIPETPYNCTIQMPSTEFQRIVRDLQVLGDTCQISCTKEGVRFSVTGNIGTGNV
LIRSNAAAEKEDDRVVIEMQEPVELTFALRYLNFFTKATPLSGHVIISMAPDIPVMIEYP
ISETGHIKFFLAPKIEEDAD
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaagcacgcttggtcgaaggcaaaatcttcaaacagatcatcgagtccattaag
gatctcgtcaccgacgccaacattgaatgtacggaagaagaaattgccattcaatgtatg
gactcggcgcacgtgtcgctcgtcgacgtgacgctatccgcagcagcctttgatcactac
cgctgtgatcgcaatctctcgctcggattcaattctgccaacatgagcaaaatcttcaaa
atgatgaatccggacgatgtggtcgtcatgaaggccgaagacaacggcgacgcgctcacc
atgatgttcgaaagcaccaagaccgagacgattgctgacttcgagctcaagctcatggag
attgacagcgaacagctcgctattcccgaaacaccctacaactgcaccatacaaatgccc
agtacggagttccaacgcatcgtccgggatttgcaagtactcggcgacacgtgccagatt
tcctgtaccaaggaaggcgtgcgcttctccgtcacgggaaacattggcaccggcaacgtg
ctcattcgttccaacgctgccgcggaaaaagaagacgaccgggtcgttatcgaaatgcag
gaaccggtcgaactcacctttgccctgcgctacctcaacttttttaccaaggcgactccg
ttgagtggacacgtcattatctccatggcaccggacatccccgtcatgatcgagtatccc
attagtgaaaccggacacatcaagttctttttggcacccaagattgaagaagacgccgat
taa
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integrated database retrieval system
