Phaeodactylum tricornutum: PHATRDRAFT_47404
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Entry
PHATRDRAFT_47404 CDS
T01075
Symbol
RAD4
Name
(RefSeq) xeroderma pigmentosum group
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PHATRDRAFT_47404 (RAD4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pti03400
]
PHATRDRAFT_47404 (RAD4)
DNA repair and recombination proteins [BR:
pti03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
PHATRDRAFT_47404 (RAD4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BHD_3
BHD_1
BHD_2
Rad4
Motif
Other DBs
NCBI-GeneID:
7202544
NCBI-ProteinID:
XP_002181579
JGI:
47404
UniProt:
B7G396
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All DBs
Position
13:<542539..>545112
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AA seq
857 aa
AA seq
DB search
MSFAWNPSSDEEDLDEWTRREGFQCDTSILSAADPVNRDDIRENASTFVSTDAWEQMGRS
PAGLPTSLTLDSSDEEEEVDWEDVADGNGDLKPAAVTASHQPVTTNKSVMIDLSKKTPDV
SPVIESKRKARTRKRFRNESLPQYLQTLLRDLHRTSLLFLASRAIYLSKLTTNDEFLAVA
HSLVPLSLLHQLTSTDTVHSSRETIPPTRHDLRMFCDWYFAFVHNVDSRRRQQLAAHHAA
GAPTATIRRVRQPRGKASKAHSNQVRHVDANPIKMLSSSNGDDPSDCSLLEYAAYVALSD
HGDPQAQTVWRKRDVEFSERHPTLLLLAIARSLGWRARLVQAMNPIRSDLDVAHPILTCS
QNIFVTLSHNLQHQSPRSAASKRKRASTTPELQTEVTPVGMSSSISQRNVTADWVEILIQ
DGSTRSGFRWIHVDPVQELINRPDQIERRLAAIFSLAEGQATRKRVALGYAVAVEHAVDG
VAPVVESATGQFQITDVTPRYASSWVESLRVRGLVRGKNSLTEKNLKKSWWSITLAKLNT
SCVSIYPELDQRAGGSPADAIVVDQDSGDNLSSLVSSRPKVMATMEDHESEELQQSVENE
AIPTSKAAFKTHPIYALQSVLNSTDVLAPDAGLRICGVFKGELIYRRSDVSSALPEKKWL
YQDRKVRQGEQPIKRVKARRKTTPTKAFQALTSYGVGSSNDGSEERRAADIAQGSQPLDD
GMVDLFAIWQTDPWSPIPIGPNDAIPVNIYNNIELELLNPGLVHIDQRGASIVAKKLGIS
YAPCLLGFEGHGSNRTPTIRGIVVHAHNEQIVREAHVEATSHQMQVDEDNRRHAALLRWK
KLMVGILTKDRLERDYT
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgcgtggaatccttcgtcggacgaggaagatttggacgaatggaccaggcgg
gaagggttccaatgcgacacgagcatcctttctgctgccgacccggtcaatcgtgacgac
atccgggagaatgcttcaacatttgtttcaacggatgcgtgggaacagatgggacgttct
cctgcggggcttccaacgtcgctgactctggatagcagtgacgaagaagaagaggttgac
tgggaagacgttgccgacgggaacggggacttgaaacccgcagccgtcactgcttcccat
cagcccgttactactaacaaatctgtaatgattgatttgagcaaaaagacgccagatgtt
tcaccagtgatagagtccaaaaggaaggcaaggacccgcaaaaggtttcgcaacgaatct
ctaccacagtatctacagacgcttctacgggatctgcaccgaaccagtttactttttcta
gcatcgcgagccatctacctttccaaactcacgactaatgatgaatttcttgcagttgcg
cacagtcttgttcccttgagtctcttacaccagctcacgtccaccgatactgtgcacagc
tcgcgggaaacaatcccaccgacacggcatgatttgcgcatgttttgcgattggtatttt
gcgttcgtacacaacgtggacagtcgtaggagacagcaattagcagctcatcatgcggcg
ggtgcaccgactgctaccatacgacgggtacgtcaaccacggggtaaggcgtcgaaagca
cactcgaaccaagtaagacatgttgacgcaaatccgataaaaatgttgtcgtcatcaaac
ggagacgacccatctgattgttctctactagaatatgcggcgtatgtagcgctttctgat
catggtgatccacaagctcaaacagtgtggagaaaacgagatgtggaattctcggaacgt
catccaacgctactgttgttagccattgctcgatcactgggttggcgagcacggctggta
caggcaatgaatcccattcgatccgacttggatgttgcgcatccaatcttgacctgcagt
caaaatatttttgtcactctttcgcacaatcttcaacatcaaagtccgagatctgccgcg
tccaagcgcaagagagcatctactactccagaattacagacagaggtgacgccagtcggt
atgtcgtcttctatctcccagagaaatgtcacggcggattgggttgaaattctgatccag
gatgggtcgaccaggagtggttttcgttggattcatgtcgatccggtccaggaactcatc
aatagaccggatcaaatcgaaaggcgactggctgccatattttcattggctgaagggcag
gcaacacgaaaacgtgtagcgttggggtacgctgttgcagtagagcacgccgtagacggg
gtagcacccgtagtagaatcagccacaggacaattccagataacggatgtgactcccaga
tacgcgtcaagctgggttgagtcgctgcgtgttcgaggactggtgcgtggaaagaattct
ttgacagaaaaaaacctgaaaaaaagctggtggtcgataaccttggcgaaactgaataca
tcttgtgtttccatatacccagagttggaccaaagggctggtggtagtcccgctgacgca
attgttgtagaccaggattcgggagacaacctgtcgtctttggtcagctctagaccaaag
gtgatggcaacaatggaagaccatgaatctgaagagttacagcagtcagttgagaacgag
gcaattcccacctccaaggctgccttcaagactcaccctatttatgctcttcaatctgtg
cttaattcgacagacgtactcgcaccggatgctggccttcgcatatgtggtgttttcaaa
ggagagcttatttaccgacgtagcgatgttagttctgcgcttccggagaagaaatggctt
taccaagatcgcaaggtccgtcaaggcgagcagccgatcaagcgtgtgaaggcacgcaga
aagacaaccccgaccaaagcatttcaagcattgacttcatacggggtagggtcgtccaat
gacggtagtgaggaaagacgagctgccgatattgctcaaggctcgcagcctctcgatgac
gggatggtggatctttttgcgatttggcagacagatccatggtctcctatcccgattggc
cccaacgatgccattccggtaaacatttataacaacatcgaactggagttgctaaatcct
gggctcgtacacatcgaccaacgtggcgcatcgattgtggctaagaaactcgggatttcc
tacgccccttgtttgctaggctttgaaggtcacggtagtaaccggactcctaccatacga
gggattgtcgtgcacgctcataacgaacaaatagtccgcgaagcccatgttgaagctacg
tcgcatcagatgcaagtcgacgaagacaatcgtcgacatgcggcgttacttcgatggaaa
aagctaatggtcggaattctgacgaaagatcgcttagagcgtgactacacataa
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