Phaeodactylum tricornutum: PHATRDRAFT_54289
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Entry
PHATRDRAFT_54289 CDS
T01075
Symbol
RNAP-II_2
Name
(RefSeq) hypothetical protein
KO
K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:
2.7.7.6
]
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PHATRDRAFT_54289 (RNAP-II_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pti03021
]
PHATRDRAFT_54289 (RNAP-II_2)
Enzymes [BR:
pti01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PHATRDRAFT_54289 (RNAP-II_2)
Transcription machinery [BR:
pti03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
PHATRDRAFT_54289 (RNAP-II_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
7199698
NCBI-ProteinID:
XP_002178910
JGI:
54289
UniProt:
B7FVD4
LinkDB
All DBs
Position
5:complement(2690..6619)
Genome browser
AA seq
1211 aa
AA seq
DB search
MEGFDHVHGQDVIDAVDQHPLGSAGRKLLEDDDHGKGGKQHIQQPQVHDYGSTKTPDDAP
VGSLRDKWRLLPYFLRLRSLLRQHIDSFDHFVDVEMQQIVQSPSACEIRSEHDPKFYLRY
EACWVGEPSVEEDSYSVKSATPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKRKVMIGRMP
IMLRSKKCLLRDRSEDDLAGMKECPYDPGGYFVIKGVEKVILIQEQLSKNRVILEEDNKG
IMASITSSTHERKSKAYILIKNGRVYLKNNTLGDDIPVAVVLKAMGIESDLELVQLVGSE
SPIINALALSLEEPSRLGIHTQAQALRFIGAKIRGRSGPSGPSSSYRKNVSPEDEAREVL
ANVVLSHVPVTHFDFREKALYIGHIVRRVLLVHLGKMPLDDKDYYGNKRLELAGNLLSLL
FEDLFKIFNKDLKRQADLVLSKPNRTQAFDVVKTIRPDTITNGMINAIATGNWVLKRFRM
DRAGVTQVLSRLSYMSALGMMTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACG
LVKNLALLGHITTDEADTRPIERICRDLGVEDVKRMTGHEINSHQAFLVFLNGLILGVHT
RPRELVRNLRKMRRRGLAGEFVSVYLHDEQCAVHIATDGGRVCRPLLIVDEETGLPKLQQ
IHMESLALGTMDITDLMRQGIVEYVDCNEENNTLIAVTERDLEVAILHGLETRKMRYTHL
EVDPFTILGVVGGIIPFPHHNQSPRNTYTVAMAKQAMGSVSMNQYERMDGLIYTLIYPQK
PMVKSRTLDLVNFDNIPGGHNACIAVMSYSGYDIEDAIILNKAAVDRGFGRCMVLRKHQT
SVRRYANGTMDRTCAPPDPGSFPDGEDDKRFARYMAIDKDGICRVGEKIENGSVMVNKES
PADTTSNMAGVDFGFNSGMSMAHLNYKPSGVSYRGSASTYVDKVLITSNENEQFLIKVML
RQVRRPEIGDKFASRHGQKGVCGLIVPEEDLPFNEFGHVPDLIMNPHGFPSRMTVGKLLE
LLVGKAGLYEGRQGYSSAFGEEFGSADTAQSASEALLRNGLNYTGKDILYSGTNGEPLDA
YIFSGPVFYQKLKHMVLDKAHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGV
SNLIMERLMHSSDAFSANVCLTCGLLQYEGWCQYCRSGEKVADIRLPYACKLLFQELQSM
NVLPRLRLQDK
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atggaagggtttgaccacgttcatggacaagacgtgatcgacgcagtcgatcagcaccct
ttaggttccgcaggccgaaagcttttggaagacgacgaccacggcaagggaggcaagcag
cacatccaacaacctcaagttcacgactatggatctaccaagacacccgatgacgcccca
gttggaagtcttcgggataaatggagattgcttccgtactttctaagactacgatcgctt
ctccgccagcacattgactccttcgaccattttgtcgatgtcgaaatgcagcaaattgtc
caaagtccttcggcgtgcgagattcgttccgaacacgatccaaaattttatttgcgttat
gaggcttgctgggtcggagaaccctctgtggaggaagattcttattcggtgaaatccgcc
acgcccttccaatgccgacttcgcgactgtacttactcggcacctatctacgtcaacgtt
cgctacacccggggacggcagattgtcgtcaaaagaaaggtcatgattgggcgaatgcca
atcatgttgcgctccaagaaatgtcttctccgggacaggtcggaagacgatctggcgggt
atgaaggaatgcccttacgatcctggcggctacttcgttattaagggcgtggagaaggta
atacttattcaggagcaattgtccaagaatcgagtcatcttagaagaagacaataaaggt
atcatggcgtcgatcacgtcctccacccatgaaaggaaatcgaaggcctatattctgatt
aagaacggccgcgtgtatcttaaaaacaatactctcggcgacgatattccagttgctgtt
gtactgaaggcaatgggcatagagtctgatttggagcttgtgcagcttgttggtagcgag
tcaccgatcatcaacgcactggccctttcgctggaagagcctagccgtctcggtatacac
acacaagctcaggcactacgtttcattggtgccaaaattcgtggccgatcggggcccagt
gggccaagcagtagctatagaaagaatgtgtctcccgaagacgaggcgagagaggtgctg
gcgaacgttgtactgagccacgttcccgttacacattttgattttcgtgagaaggctctc
tatattggccatattgttcggcgagtattgttggtacatcttggcaagatgccgttggat
gacaaggattactacggaaacaaacgcctcgaactagctggaaatctattgagcttactt
tttgaggatttgttcaagattttcaacaaagatttgaagcgacaggccgatctcgtcctg
tcaaagccaaatcgcacacaagcctttgatgttgtcaaaacgattcgccctgatacaata
acaaacggaatgatcaacgctattgcaacaggaaattgggtgttaaagcgatttcgtatg
gaccgagccggggtcacgcaagttctgtctcgtctttcgtatatgtctgcccttggcatg
atgacccgaatcaacagccaatttgagaaaactcggaaagtgagcggcccgagatcattg
cagccttcgcaatggggtatgttgtgtcccgcagatactcccgaaggtgaagcctgcggt
ttggtgaaaaatttggcgttgcttggacacattacaaccgatgaagctgacacaagacct
attgaacggatttgcagagaccttggagttgaagacgtcaagcggatgacgggccacgaa
attaattcgcaccaagcctttctagtgtttttgaacggactgatactaggggtgcacact
cggccgagagaacttgttcggaacctccgaaagatgcgacgtagagggctggcgggagag
tttgtctccgtctatctccacgacgaacagtgcgcggttcacatcgccactgatggtggt
agagtttgccggccacttttgatcgtggacgaagaaactggcctacccaaactacaacaa
attcatatggaatcgttggcattgggtacgatggacatcaccgacttgatgcggcaagga
atcgttgaatatgtagactgcaacgaagaaaataacacgctgatcgcggtcacagaacgt
gatttggaagtcgctatcttgcacgggttggaaacgcgtaaaatgcgttatacacatttg
gaggtagatccattcaccattttgggtgtcgttggggggatcattccgtttccgcaccac
aaccagtctccgcgaaacacctatactgttgctatggcaaaacaggctatgggttctgtg
tcaatgaaccaatacgaacgaatggacggtcttatctataccctaatttatccacaaaaa
ccaatggtgaaaagtagaaccctggatttggtaaatttcgacaatataccaggtggtcat
aacgcgtgcattgccgtgatgagttacagtggctatgatattgaagatgcaatcattctg
aacaaggcagcagttgatcgagggtttgggcgttgtatggttcttcgaaaacaccaaaca
agtgttcggcgctacgccaatggaactatggaccggacttgtgctcctcctgatccaggt
agttttccggatggcgaagacgataagcgtttcgctcgatacatggcaattgacaaagat
ggaatttgccgagtcggggaaaagattgaaaatggctcagtaatggttaacaaggaatcc
cctgcagacaccactagcaatatggctggcgtcgatttcggatttaacagcggcatgtcg
atggcccacttgaattacaaaccctctggagtatcttatcgcggaagtgcgtctacctat
gtcgataaagtgctgataacatcaaacgaaaacgagcaatttctgatcaaagttatgctt
cgtcaagttcgccggccagaaatcggggataaatttgcttcacggcatgggcaaaaagga
gtctgtggtttaattgtaccggaagaagaccttcctttcaacgaatttgggcacgtcccc
gatctaataatgaacccacatggctttccttctcggatgactgtcgggaagcttttagag
cttttggtaggaaaggcaggcctgtacgaaggtcgtcaaggatattcctcggctttcgga
gaggaatttggttctgctgacactgcacaatctgcgtcggaggctttgctgagaaatggt
ctcaactataccggtaaagatattctctatagtggcactaacggcgagccattggatgca
tacattttctccggccccgtgttttatcaaaagctcaagcacatggttttggacaaggca
catgcgcgggcccggggtcctcgcgccgtgctaacacgtcagccgacagaaggtagatct
cgtgatggtgggttgcgtttgggtgaaatggaacgcgattgtttaattgcgtatggagta
tcaaacttgatcatggagcgccttatgcattcttcggatgccttcagtgccaacgtttgc
ctcacttgtgggctactacaatacgaaggttggtgtcaatactgccggtccggcgaaaaa
gtggctgatatccgtttaccctatgcttgtaagcttctattccaggagctccaatcgatg
aatgtcttacctcgtctccgactgcaagataaatga
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integrated database retrieval system