Phaeodactylum tricornutum: PHATR_10354
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Entry
PHATR_10354 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PHATR_10354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pti03019
]
PHATR_10354
Messenger RNA biogenesis [BR:
pti03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PHATR_10354
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PHATR_10354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
ARM_Cnot1
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
7204086
NCBI-ProteinID:
XP_002186193
JGI:
10354
UniProt:
B5Y5J2
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Position
3:1151227..1153245
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AA seq
653 aa
AA seq
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KDMGTWSTYAPTNTEQQRRLHRTVLLLLVRSRLLSVHDLDSFLAARADNGSNHIWLEFSL
LFIRTAFMEKIATTADFPKLLDLMSQVAEGRSDASAQIPQSFRKPILLMLEEARVPALQI
HAPVPASASKSVETQRLESSSIASFFRNDPTTAKQQVTALLEGWIRLQSEPSLNEKALAQ
YMIILQRFGMGKNEEQTERFLRNSVIIVVDAALKSSTQRGDGKKHINYVFIDHFAKLLGI
LVRHMNAGGSADQVNAQRLGVLNKILGTIVRSMMWHYESSMEGSANPWDQRPWFRLLLNL
VIDLNKPDPVFEAVRLGILSVFGAAFHVCQPMIFPAFAFSWLELVSHRHFLPNLILFSDE
KGWNVAHQLLIDQLLFLEPSLRRVELTVPVKKLYEGTLRVLLVLLHDFPTFLAGFHLSFC
NVIPESCVQLRNIILSATPKAMNPPDPFTPNLKIDLLPEISQSPTILSNILSPIASFRGH
LDAFLKDGQRRNFLLELLPLLHRDGGAEIDVPKVNSLVVYVGAHALARLQNSQISLTRTP
EMEVIQKLMELEDRGRYVCLNAIVNQLRYPSSHTHYFSCVVLYLFSEFKSVAVKEQVTRV
LLERLIVNRPHPWGLLITFIELVKNQRYGFWNYPFTRCATEIEKVFESVARSC
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
aaagacatgggcacttggtccacgtacgctcccaccaacactgaacagcagcgaagatta
caccggactgtgttgttacttctcgtccggagccgccttttgtctgtacacgatcttgat
tcttttctcgccgcaagggctgacaatggtagcaatcatatatggcttgaattctccttg
ctctttattcgtactgctttcatggaaaaaatagctacaacggctgactttccgaagcta
cttgatttgatgagtcaagtcgctgagggcaggagcgatgcaagtgctcaaattccgcaa
tcttttcgaaagccaatcttgctgatgctagaggaagctcgtgttccagctctccagatc
cacgcaccagttcctgcgagtgcgagcaagtcggtagaaacgcaacgacttgaaagtagc
agcattgcgtctttcttccgaaacgatccaacaactgcaaagcagcaagttactgccttg
ctagaagggtggatccgtctgcagtctgagccctctctgaacgagaaagctctcgctcaa
tacatgattattttgcagcgcttcgggatggggaaaaacgaggagcagacggaaaggttc
ctccgaaattctgtcatcattgttgtcgatgctgctctcaaatccagtactcagcgtgga
gacgggaagaagcatatcaattacgtattcatagaccacttcgccaagcttctcggtatt
cttgttcgtcacatgaacgcaggaggctcagccgaccaagtaaatgctcagcgcctggga
gttctcaacaagattcttgggacaatcgtcaggtcgatgatgtggcactatgaaagtagt
atggaagggtctgcaaacccgtgggaccagcgtccgtggtttcgtctcttgctcaatctt
gtaattgatctaaacaagccggatcctgtatttgaggctgttcgtctcggcattttgagt
gttttcggagccgcctttcacgtatgccaaccaatgatatttccagctttcgcattctca
tggctcgagcttgtgtcgcataggcacttccttcctaacctgattttgttctccgacgaa
aagggatggaatgtcgctcatcaattactgattgaccagcttcttttcttggaaccttcg
ctaaggcgagttgaactcactgtacccgtcaaaaagctatatgaagggaccttgcgtgtt
ctgcttgttttacttcacgatttcccaacttttctcgccggttttcatctcagcttctgt
aatgttattcccgaaagctgcgtacagcttcgtaacattattctgtctgccactccgaag
gccatgaatcctccggacccgttcactccaaatctcaaaatcgatttgcttcccgagatc
tctcaaagtcctacaattttgtcgaatattcttagtccaatcgcttcctttcgtgggcat
ctcgatgcgttcctaaaggatggacagcgtcggaactttctcttggagcttcttcctttg
cttcatcgtgatggtggagctgaaattgacgtgccgaaagtcaattctttggttgtttat
gttggagcgcatgcactggcgaggcttcaaaactcacagatttctctgacgcgtactccg
gagatggaggtaatccagaaactaatggaactagaagatcgggggcgctacgtttgcctg
aatgcaatcgtgaaccagctaagatatccgtcgagtcacacgcactacttttcctgcgtc
gtgctctatctcttcagcgagttcaagagcgtcgctgtgaaggagcaagtaacaagggta
ctgctcgaacgccttattgtaaatcgccctcacccatggggtttgttgattacgttcatt
gaactcgtcaaaaatcaacgctatggcttttggaattatccttttacacgctgtgccact
gagattgagaaagtctttgaatcagttgctcgttcctgc
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