KEGG   Phaeodactylum tricornutum: PHATR_18735
Entry
PHATR_18735       CDS       T01075                                 
Name
(RefSeq) hypothetical protein
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PHATR_18735
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pti03019]
    PHATR_18735
Messenger RNA biogenesis [BR:pti03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PHATR_18735
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     PHATR_18735
SSDB
Motif
Pfam: CNOT1_CAF1_bind CNOT1_TTP_bind
Other DBs
NCBI-GeneID: 7203903
NCBI-ProteinID: XP_002186192
JGI: 18735
UniProt: B5Y5J1
LinkDB
Position
3:1148774..1150129
AA seq 442 aa
MFNFGMFALEQFKGRLHEWPQYCSHIVQIPHLKDGYAALVSEIEREMSKNQGAASVAGQQ
PPVPKVLESGLAGDTLLPHPPGEAITSHRSQSAPVPSALELSSEVLNLSSPPRVAEFGPK
LGRAVTDSPDSENDFDAPTDTVLDRVQFLVNNLAQSNVEQKAQDLKEMLDPKYFGWLGHF
LVVKRISTQANFHSLYLSFLDNLGDYGKGLMEAIINSVYRNIGKLLRSSKITTSSSERGY
LKNLGIWLGQITLARNRPILQIMLDAKELLLQGYETGKLIAVAPFLAKTLEGAKNSRIFR
PPNPWLMGILGVFRSVYMVDGLKMNIKFEVEVLCKNLGIKLEEIPLRNGVLAKRIAPVKE
RNPDFNIKSASSGSKSSATGVVPSRSLVGSSEAQSLNLPIPSTVPSSEDKSGQDPQDTVI
PNLASYVTVNASLPQLLQTQGS
NT seq 1326 nt   +upstreamnt  +downstreamnt
atgttcaactttggtatgttcgcgctcgaacaatttaaaggccggcttcatgaatggcca
cagtattgctcccatattgtacagataccacacttgaaagatggctacgctgcgttagtt
tctgagattgaacgagaaatgagcaagaatcagggcgctgcttccgtggcaggccaacag
cctcctgtaccaaaagttcttgaatcaggactcgctggcgacactttactacctcatcca
ccgggcgaggcaataacgtcccatcgatcccaaagtgctcccgtaccaagtgcgcttgag
ctatcgtcggaggtgctgaacttatcctcgccgccgcgggttgccgagtttgggcctaag
cttgggcgtgccgtgacggatagtcctgattccgaaaacgactttgatgctccgacggat
acggttttagaccgcgtccagttcttggtgaataatcttgcacagtcaaacgtagagcag
aaggctcaggacctcaaggagatgttggacccaaagtactttggttggcttggtcatttt
ttggttgtaaagcgcattagcacacaagcaaattttcattcgctctatttgtcattcctc
gacaatctaggggactatggaaaaggtttgatggaagcgatcatcaatagcgtttaccgc
aacatcggaaagcttcttcgatcgtccaaaattacgacgtcgtcatcggagcgaggatat
ctcaagaatctaggaatttggcttggtcagattactctggctcgaaatcggccaattctg
cagattatgttggacgcaaaggaattgctactccagggatacgaaacgggcaagctgatc
gcggttgccccgtttttggcaaagacccttgagggtgcgaaaaattccagaatttttcgt
ccaccaaatccttggctcatgggcattcttggtgtatttcggtcggtttacatggtcgac
ggtctcaagatgaatattaaattcgaagttgaagttctctgcaaaaatcttggcataaag
ctggaagagattccgctccgcaacggcgtcctggcgaagcgcatcgcaccggtgaaagaa
cgtaatcctgattttaacatcaagagcgcatcatcggggtcaaagtcgtccgcaacggga
gtcgtgccttcccgctctcttgtcggtagctctgaggctcagtctctcaatttgccgatt
ccgtcgacagtaccaagtagcgaggataagtcggggcaagacccacaggacacggtaata
cctaatcttgcctcttacgtcacagtcaacgcaagcttgccgcagcttctccaaacccaa
gggagc

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