Phaeodactylum tricornutum: PHATR_18735
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Entry
PHATR_18735 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PHATR_18735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pti03019
]
PHATR_18735
Messenger RNA biogenesis [BR:
pti03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PHATR_18735
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PHATR_18735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CNOT1_CAF1_bind
CNOT1_TTP_bind
Motif
Other DBs
NCBI-GeneID:
7203903
NCBI-ProteinID:
XP_002186192
JGI:
18735
UniProt:
B5Y5J1
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All DBs
Position
3:1148774..1150129
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AA seq
442 aa
AA seq
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MFNFGMFALEQFKGRLHEWPQYCSHIVQIPHLKDGYAALVSEIEREMSKNQGAASVAGQQ
PPVPKVLESGLAGDTLLPHPPGEAITSHRSQSAPVPSALELSSEVLNLSSPPRVAEFGPK
LGRAVTDSPDSENDFDAPTDTVLDRVQFLVNNLAQSNVEQKAQDLKEMLDPKYFGWLGHF
LVVKRISTQANFHSLYLSFLDNLGDYGKGLMEAIINSVYRNIGKLLRSSKITTSSSERGY
LKNLGIWLGQITLARNRPILQIMLDAKELLLQGYETGKLIAVAPFLAKTLEGAKNSRIFR
PPNPWLMGILGVFRSVYMVDGLKMNIKFEVEVLCKNLGIKLEEIPLRNGVLAKRIAPVKE
RNPDFNIKSASSGSKSSATGVVPSRSLVGSSEAQSLNLPIPSTVPSSEDKSGQDPQDTVI
PNLASYVTVNASLPQLLQTQGS
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgttcaactttggtatgttcgcgctcgaacaatttaaaggccggcttcatgaatggcca
cagtattgctcccatattgtacagataccacacttgaaagatggctacgctgcgttagtt
tctgagattgaacgagaaatgagcaagaatcagggcgctgcttccgtggcaggccaacag
cctcctgtaccaaaagttcttgaatcaggactcgctggcgacactttactacctcatcca
ccgggcgaggcaataacgtcccatcgatcccaaagtgctcccgtaccaagtgcgcttgag
ctatcgtcggaggtgctgaacttatcctcgccgccgcgggttgccgagtttgggcctaag
cttgggcgtgccgtgacggatagtcctgattccgaaaacgactttgatgctccgacggat
acggttttagaccgcgtccagttcttggtgaataatcttgcacagtcaaacgtagagcag
aaggctcaggacctcaaggagatgttggacccaaagtactttggttggcttggtcatttt
ttggttgtaaagcgcattagcacacaagcaaattttcattcgctctatttgtcattcctc
gacaatctaggggactatggaaaaggtttgatggaagcgatcatcaatagcgtttaccgc
aacatcggaaagcttcttcgatcgtccaaaattacgacgtcgtcatcggagcgaggatat
ctcaagaatctaggaatttggcttggtcagattactctggctcgaaatcggccaattctg
cagattatgttggacgcaaaggaattgctactccagggatacgaaacgggcaagctgatc
gcggttgccccgtttttggcaaagacccttgagggtgcgaaaaattccagaatttttcgt
ccaccaaatccttggctcatgggcattcttggtgtatttcggtcggtttacatggtcgac
ggtctcaagatgaatattaaattcgaagttgaagttctctgcaaaaatcttggcataaag
ctggaagagattccgctccgcaacggcgtcctggcgaagcgcatcgcaccggtgaaagaa
cgtaatcctgattttaacatcaagagcgcatcatcggggtcaaagtcgtccgcaacggga
gtcgtgccttcccgctctcttgtcggtagctctgaggctcagtctctcaatttgccgatt
ccgtcgacagtaccaagtagcgaggataagtcggggcaagacccacaggacacggtaata
cctaatcttgcctcttacgtcacagtcaacgcaagcttgccgcagcttctccaaacccaa
gggagc
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