Phaeodactylum tricornutum: PHATR_46906
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Entry
PHATR_46906 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K14313
nuclear pore complex protein Nup53
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PHATR_46906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pti03019
]
PHATR_46906
Messenger RNA biogenesis [BR:
pti03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
PHATR_46906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_Nup35
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
7204447
NCBI-ProteinID:
XP_002185783
JGI:
46906
UniProt:
B5Y458
LinkDB
All DBs
Position
11:768181..769525
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AA seq
386 aa
AA seq
DB search
MKGVRYFYVGYVRKVRLETSLPSTFVSWVGLRFWFDYSIFGWLGTVRRLKDRCQIRGTGK
PPASLSLGCGTQNRLKYDIMVSPSGRSGFSFGESPPNDSPFERKSESYRDTSTTGQNALV
LGNTNGSNNDENWNPLTRDSHGLRRRKQNEIPLSRKSVVPPPRSSYSLGGSGMDLVPVEP
RKEYSSFGGSPSTASKPDYLPSDLTSPTQGQMVVSSSNSWTNAAPHGAPEDDHGGWVLVY
GYSTAAQYDEILRVFGQFGVMVQHKGSCAPGRTNWVAVQYASRLEAEKALCHQHLPLADG
VFCGVKKLDGNDPILLHTADTALSTLWSRNSGVPESKGTSSNARVGILEEKDVLLETDRE
QGDGNLPPRTIGICERFARWVLAIED
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtgtacgttacttttacgttggttatgtaaggaaggtacggctagagacaagc
ttgccgagcactttcgtgtcgtgggtcggtctccgcttttggtttgactattcaattttt
ggatggcttgggacagtccgacgactaaaagatcgttgccagatccgaggtaccggaaag
ccgcccgcatcgctctcacttggatgtggaacacaaaatagattgaaatacgatatcatg
gtgagtccttccgggcggtctggtttttcctttggcgaatcgcccccaaacgatagcccg
tttgaaaggaaatcagaatcctaccgcgacacttcaacaacgggtcagaatgcgctggtt
ctggggaatacgaacgggtcgaacaacgatgaaaattggaatccattgacacgtgacagt
catggtttacgtcggcggaagcagaacgagattcccctctctagaaagtccgttgttcca
ccgccacgatctagttacagtctaggaggtagcgggatggatctggtaccagtggaacca
cgaaaagagtattcgtcgttcggaggctccccatctaccgcatcaaagccggattatctg
ccatccgacctcacttccccgacacaggggcagatggtggtatcgtcgtcaaattcttgg
accaacgcggcaccccacggcgctccggaggacgaccatggcggttgggttttggtgtac
gggtacagtaccgcggcacaatacgacgagattttgcgcgtgtttggacagtttggtgtg
atggtgcaacacaagggatcctgcgcgcccggtcgaacgaactgggtcgcggttcagtac
gccagtcgattggaagccgaaaaagccttgtgccatcaacatctgccgctggccgacggc
gtcttttgtggcgtgaagaaactagacgggaacgacccaatcttgttacatacggcggat
accgccttgtccacattgtggagtcggaatagcggagtacccgagtcgaagggaacctca
tccaacgcgagggttggaatattagaagaaaaggacgtactcttggagactgacagagaa
cagggcgatggcaatctaccaccacgcacaattggcatctgcgaacggttcgctcgatgg
gtgctggctattgaagactaa
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